View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_high_50 (Length: 306)

Name: NF9879_high_50
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_high_50
NF9879_high_50
[»] chr4 (3 HSPs)
chr4 (18-293)||(8474595-8474857)
chr4 (240-293)||(55097981-55098034)
chr4 (205-285)||(19984295-19984375)
[»] chr7 (4 HSPs)
chr7 (213-293)||(34925265-34925345)
chr7 (212-264)||(1791399-1791451)
chr7 (214-286)||(23747360-23747432)
chr7 (245-285)||(43472996-43473036)
[»] chr1 (2 HSPs)
chr1 (241-285)||(15255160-15255204)
chr1 (240-293)||(24808423-24808476)
[»] chr8 (2 HSPs)
chr8 (240-283)||(14480867-14480910)
chr8 (214-286)||(31107396-31107468)
[»] chr2 (2 HSPs)
chr2 (233-287)||(26300326-26300380)
chr2 (202-247)||(7955856-7955901)
[»] chr6 (1 HSPs)
chr6 (191-260)||(30876634-30876703)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 8474595 - 8474857
Alignment:
Q  18 aacacaaatttacaactattttacactgaagagaagagtttatgagtgtagtcgattgcagaccatggcgaatggggaaaaggccgttcttttgaaccac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  8474595 aacacaaatttacaactattttacactgaagagaagagtttatgagtgtagtcgattgcagaccatggcgaatgggcaaaagtccgttcttttgaaccac 8474694  T
Q  118 cataaaacgccatggcacccagtgttatcaaatagaggctatggctctaaacttagccgaatttaaacaaaacgttatgattctacaatacattatttag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8474695 cataaaacgccatggcacccagtgttatcaaatagaggctatggctctaaacttagccgaatttaaacaaaacgttatgattctacaatacattatttag 8474794  T
Q  218 tacaaagtattgtttaataaccgctatagcattgtagcatagcagaattcaaacaaaccactattttccatgatct 293  Q
    ||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||    
T  8474795 tacaaagtattgtttaataa-------------gtagcatagcagaattcaaacaaaccactattttccatgatct 8474857  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 55097981 - 55098034
Alignment:
Q  240 gctatagcattgtagcatagcagaattcaaacaaaccactattttccatgatct 293  Q
    |||||||||||||||||||||| | ||  |||||||||||||||| | ||||||    
T  55097981 gctatagcattgtagcatagcatactttgaacaaaccactattttgcttgatct 55098034  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 19984375 - 19984295
Alignment:
Q  205 atacattatttagtacaaagtattgtttaataaccgctatagcattgtagcatagcagaattcaaacaaaccactattttc 285  Q
    |||| |||||||||||||| ||||||  |||||| ||||||||| ||  || ||||||||||  | ||||| |||||||||    
T  19984375 atacgttatttagtacaaaatattgtgaaataacagctatagcagtgctgcgtagcagaatttgagcaaacaactattttc 19984295  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 34925345 - 34925265
Alignment:
Q  213 tttagtacaaagtattgtttaataaccgctatagcattgtagcatagcagaattcaaacaaaccactattttccatgatct 293  Q
    ||||||||||| | ||||  |||| | |||||||||||||||||||||||||||  |||||||  |||||||||| |||||    
T  34925345 tttagtacaaaatgttgtcaaatagcggctatagcattgtagcatagcagaatttgaacaaactgctattttccacgatct 34925265  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 1791451 - 1791399
Alignment:
Q  212 atttagtacaaagtattgtttaataaccgctatagcattgtagcatagcagaa 264  Q
    |||||||||| ||||||||  |||| | |||||||||||||||||||||||||    
T  1791451 atttagtacagagtattgtcaaatagcggctatagcattgtagcatagcagaa 1791399  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 23747360 - 23747432
Alignment:
Q  214 ttagtacaaagtattgtttaataaccgctatagcattgtagcatagcagaattcaaacaaaccactattttcc 286  Q
    |||||||||| | ||||  |||||  ||||||||| | |||  |||||||||| |||||||||||||||||||    
T  23747360 ttagtacaaactgttgtcgaataatagctatagcactatagggtagcagaatttaaacaaaccactattttcc 23747432  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 43472996 - 43473036
Alignment:
Q  245 agcattgtagcatagcagaattcaaacaaaccactattttc 285  Q
    ||||||||||| || ||||||| ||||||||||||||||||    
T  43472996 agcattgtagcgtaacagaatttaaacaaaccactattttc 43473036  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 15255204 - 15255160
Alignment:
Q  241 ctatagcattgtagcatagcagaattcaaacaaaccactattttc 285  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||    
T  15255204 ctatagcaatgttgcatagcagaatttaaacaaaccactattttc 15255160  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 24808423 - 24808476
Alignment:
Q  240 gctatagcattgtagcatagcagaattcaaacaaaccactattttccatgatct 293  Q
    |||| |||| |||||||||||||||||  ||||||||||| |||||| ||||||    
T  24808423 gctaaagcactgtagcatagcagaatttgaacaaaccactgttttccgtgatct 24808476  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 14480867 - 14480910
Alignment:
Q  240 gctatagcattgtagcatagcagaattcaaacaaaccactattt 283  Q
    |||||| ||||||||| |||||||||||||| ||||||||||||    
T  14480867 gctataacattgtagcgtagcagaattcaaagaaaccactattt 14480910  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 31107396 - 31107468
Alignment:
Q  214 ttagtacaaagtattgtttaataaccgctatagcattgtagcatagcagaattcaaacaaaccactattttcc 286  Q
    |||||||||| ||||||  ||||| | |||||||||||| ||||||||||| || |||| || | ||||||||    
T  31107396 ttagtacaaaatattgtgaaataatcactatagcattgttgcatagcagaaatcgaacatactaatattttcc 31107468  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 26300326 - 26300380
Alignment:
Q  233 aataaccgctatagcattgtagcatagcagaattcaaacaaaccactattttcca 287  Q
    |||||| || ||||| ||||||||||||| ||||  |||||||||||||||||||    
T  26300326 aataactgcaatagccttgtagcatagcaaaatttgaacaaaccactattttcca 26300380  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 7955901 - 7955856
Alignment:
Q  202 acaatacattatttagtacaaagtattgtttaataaccgctatagc 247  Q
    |||||||| ||||||||||||| |||||||||||| | ||||||||    
T  7955901 acaatacactatttagtacaaaatattgtttaatagctgctatagc 7955856  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 30876703 - 30876634
Alignment:
Q  191 gttatgattctacaatacattatttagtacaaagtattgtttaataaccgctatagcattgtagcatagc 260  Q
    ||||| |||||||  ||||  |||||||||| |||||| || |||| | |||||||||||||||||||||    
T  30876703 gttattattctacgctacacgatttagtacagagtatttttaaatagcagctatagcattgtagcatagc 30876634  T

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