View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_high_53 (Length: 298)

Name: NF9879_high_53
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_high_53
NF9879_high_53
[»] chr6 (6 HSPs)
chr6 (38-284)||(6626200-6626435)
chr6 (224-284)||(6626600-6626660)
chr6 (204-238)||(6626517-6626551)
chr6 (101-146)||(7470758-7470803)
chr6 (98-147)||(17382074-17382123)
chr6 (99-171)||(29283806-29283878)
[»] chr1 (5 HSPs)
chr1 (106-167)||(51031873-51031934)
chr1 (118-179)||(17669655-17669716)
chr1 (198-246)||(8797084-8797132)
chr1 (103-179)||(16033440-16033516)
chr1 (101-141)||(24506941-24506981)
[»] chr4 (3 HSPs)
chr4 (98-167)||(11949665-11949734)
chr4 (103-146)||(27372382-27372425)
chr4 (114-179)||(39093565-39093630)
[»] scaffold0045 (2 HSPs)
scaffold0045 (103-167)||(63857-63921)
scaffold0045 (103-167)||(71189-71253)
[»] chr8 (3 HSPs)
chr8 (103-147)||(42200684-42200728)
chr8 (103-178)||(35061631-35061706)
chr8 (103-167)||(8137930-8137994)
[»] chr7 (4 HSPs)
chr7 (102-178)||(17883882-17883958)
chr7 (103-167)||(5526720-5526784)
chr7 (111-151)||(42753445-42753485)
chr7 (101-137)||(49172317-49172353)
[»] chr5 (7 HSPs)
chr5 (103-179)||(20175720-20175796)
chr5 (103-167)||(28344549-28344613)
chr5 (103-180)||(6489002-6489079)
chr5 (103-149)||(14232860-14232908)
chr5 (94-147)||(17064886-17064939)
chr5 (111-147)||(34860168-34860204)
chr5 (103-147)||(40715971-40716015)
[»] chr3 (3 HSPs)
chr3 (99-151)||(31316628-31316680)
chr3 (106-147)||(21549036-21549077)
chr3 (98-147)||(29687072-29687121)
[»] chr2 (5 HSPs)
chr2 (105-151)||(1238159-1238205)
chr2 (103-148)||(23983999-23984044)
chr2 (98-167)||(30836301-30836370)
chr2 (103-147)||(27244652-27244696)
chr2 (111-166)||(34242825-34242881)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 38 - 284
Target Start/End: Original strand, 6626200 - 6626435
Alignment:
Q  38 cttatttcaattttaattaccaattatgacagtttcattgcatataaaacattaccaagaatttatcctcgtaagcttagctcaattgatagggacaatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||  |||||| ||||||||| ||| ||||||    
T  6626200 cttatttcaattttaattaccaattatgacagtttcattgcatataaaacattaccaaga---------cg--agcttaactcaattgacaggaacaatg 6626288  T
Q  138 tatattatatacaaaattttgggttcaaactccggctaccaccnnnnnnntattaccaagaattgatattgatccataaattagttaaaaatctcaaaca 237  Q
     |||||||||||||||||| || |||||||||||||||||||        || |||||||||||||||||||||||||||||||||||||||||||||||    
T  6626289 catattatatacaaaatttcggattcaaactccggctaccacaaaaaaaataataccaagaattgatattgatccataaattagttaaaaatctcaaaca 6626388  T
Q  238 atataaattagttaaaacattttccttttctgattcaattttgtgat 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6626389 atataaattagttaaaacattttccttttctgattcaattttgtgat 6626435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 6626600 - 6626660
Alignment:
Q  224 aaaaatctcaaacaatataaattagttaaaacattttccttttctgattcaattttgtgat 284  Q
    ||||| ||||||| ||||||||||||| |||||||| | |||||| ||||| |||||||||    
T  6626600 aaaaaactcaaacgatataaattagttcaaacatttcctttttctcattcatttttgtgat 6626660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 6626517 - 6626551
Alignment:
Q  204 tattgatccataaattagttaaaaatctcaaacaa 238  Q
    ||||||||||||||||||||| |||||||||||||    
T  6626517 tattgatccataaattagttagaaatctcaaacaa 6626551  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 7470803 - 7470758
Alignment:
Q  101 tatcctcgtaagcttagctcaattgatagggacaatgtatattata 146  Q
    ||||||||||||||||||||| ||| |||||| |||| ||||||||    
T  7470803 tatcctcgtaagcttagctcagttggtagggataatgcatattata 7470758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 17382074 - 17382123
Alignment:
Q  98 atttatcctcgtaagcttagctcaattgatagggacaatgtatattatat 147  Q
    |||||||||||| ||||||||||| ||| || |||||||||||| |||||    
T  17382074 atttatcctcgtgagcttagctcagttggtatggacaatgtataatatat 17382123  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 29283806 - 29283878
Alignment:
Q  99 tttatcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccg 171  Q
    ||||| |||||||||||| |||| ||| ||| ||||||||||| ||||| |||  | | ||||||||||||||    
T  29283806 tttatgctcgtaagcttaactcagttggtagagacaatgtataatatatgcaaggtctagggttcaaactccg 29283878  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 51031873 - 51031934
Alignment:
Q  106 tcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac 167  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||    
T  51031873 tcgtaaacttagctcaattgatagtgacaatgcatattatatacaaaatctagggttcaaac 51031934  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 17669655 - 17669716
Alignment:
Q  118 ctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctaccac 179  Q
    |||| ||||||||||||||||||| ||||| |||  ||  |||||||||||||||| |||||    
T  17669655 ctcagttgatagggacaatgtataatatatgcaaggttcggggttcaaactccggccaccac 17669716  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 8797132 - 8797084
Alignment:
Q  198 aattgatattgatccataaattagttaaaaatctcaaacaatataaatt 246  Q
    |||| ||||||||||  ||||| |||||||| |||||||||||||||||    
T  8797132 aatttatattgatcccaaaattggttaaaaacctcaaacaatataaatt 8797084  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 16033516 - 16033440
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctaccac 179  Q
    ||||||| |||||  |||| ||||||||||||||| ||| ||||| |||  | | |||||||||||||||| |||||    
T  16033516 tcctcgtgagcttgactcagttgatagggacaatgcataatatatgcaaggtctggggttcaaactccggccaccac 16033440  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 24506981 - 24506941
Alignment:
Q  101 tatcctcgtaagcttagctcaattgatagggacaatgtata 141  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  24506981 tatcctcgtaagcttagctcagttgatatagacaatgtata 24506941  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 11949734 - 11949665
Alignment:
Q  98 atttatcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac 167  Q
    |||||||||||| ||||||||||| |||||| | |||||  ||| |||||||||||||  ||||||||||    
T  11949734 atttatcctcgtgagcttagctcagttgataagaacaatacataatatatacaaaattcggggttcaaac 11949665  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 27372382 - 27372425
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattata 146  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||    
T  27372382 tcctcgtaagcttagctcaattggtcgggacaatgcatattata 27372425  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 39093630 - 39093565
Alignment:
Q  114 ttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctaccac 179  Q
    |||||||||||| || |||||||| ||| ||||| |||| ||| |||||||||| ||| |||||||    
T  39093630 ttagctcaattggtaaggacaatgcataatatatgcaaagtttagggttcaaaccccgactaccac 39093565  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 63857 - 63921
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac 167  Q
    ||||||| || |||||||| ||| ||||||||||||||| |||||||||| |||  |||||||||    
T  63857 tcctcgtgagtttagctcagttggtagggacaatgtataatatatacaaagtttgaggttcaaac 63921  T

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Target: scaffold0045; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 71189 - 71253
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac 167  Q
    ||||||| || |||||||| ||| ||||||||||||||| |||||||||| |||  |||||||||    
T  71189 tcctcgtgagtttagctcagttggtagggacaatgtataatatatacaaagtttgaggttcaaac 71253  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 42200728 - 42200684
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatat 147  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||    
T  42200728 tcctcgtgagcttagctcagttgatagggacaatgtataatatat 42200684  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 35061631 - 35061706
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctacca 178  Q
    ||||||| ||||||| ||||||||||| ||||||  ||| ||||||||| ||||  ||||||||| ||||| ||||    
T  35061631 tcctcgtgagcttagttcaattgatagagacaatacataatatatacaacatttgaggttcaaaccccggccacca 35061706  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 8137930 - 8137994
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac 167  Q
    ||||||||||||||||||| ||| || |||||||| |||  |||| |||| ||| ||||||||||    
T  8137930 tcctcgtaagcttagctcagttggtatggacaatgcataaaatatgcaaagtttggggttcaaac 8137994  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 17883882 - 17883958
Alignment:
Q  102 atcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctacca 178  Q
    |||||||| | ||||||||| |||||| ||| |||||||| ||||| |||  | |||||||||||||||||| ||||    
T  17883882 atcctcgtgaccttagctcacttgatatggataatgtataatatatgcaaggtcttgggttcaaactccggccacca 17883958  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 5526720 - 5526784
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac 167  Q
    ||||||| ||||||||||| ||| || |||||||| ||| |||||| || |||| ||||||||||    
T  5526720 tcctcgtgagcttagctcagttggtatggacaatgcataatatatataagatttggggttcaaac 5526784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 42753485 - 42753445
Alignment:
Q  111 agcttagctcaattgatagggacaatgtatattatatacaa 151  Q
    |||||| |||||||| ||||||||||||||| |||||||||    
T  42753485 agcttaactcaattggtagggacaatgtataatatatacaa 42753445  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 49172353 - 49172317
Alignment:
Q  101 tatcctcgtaagcttagctcaattgatagggacaatg 137  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  49172353 tatcctcgtgagcttagctcagttgatagggacaatg 49172317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 20175720 - 20175796
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctaccac 179  Q
    ||||||| ||||||||||| ||| || |||||||||||| ||||||||| |||  | |||| ||||||||| |||||    
T  20175720 tcctcgtgagcttagctcagttggtatggacaatgtataatatatacaagattcagagttcgaactccggccaccac 20175796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 28344549 - 28344613
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac 167  Q
    ||||||||||||||| ||| |||| |||||||||||||| ||||| |||  ||| ||||||||||    
T  28344549 tcctcgtaagcttagttcagttgaaagggacaatgtataatatatgcaaggtttggggttcaaac 28344613  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 6489002 - 6489079
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctaccacc 180  Q
    ||||||| ||||||||||| ||| ||||||||||| ||| ||||| |||  | | |||||||||| ||||| ||||||    
T  6489002 tcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccaccacc 6489079  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 14232860 - 14232908
Alignment:
Q  103 tcctcgtaagcttagctcaattg--atagggacaatgtatattatatac 149  Q
    ||||||| |||||||||||||||  |||||||||||||||| |||||||    
T  14232860 tcctcgtgagcttagctcaattgatatagggacaatgtataatatatac 14232908  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 17064939 - 17064886
Alignment:
Q  94 aagaatttatcctcgtaagcttagctcaattgatagggacaatgtatattatat 147  Q
    |||||||||||||||| |||||| |||||||| |||||| | || |||||||||    
T  17064939 aagaatttatcctcgtgagcttaactcaattggtagggatattgcatattatat 17064886  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 34860204 - 34860168
Alignment:
Q  111 agcttagctcaattgatagggacaatgtatattatat 147  Q
    |||||||||||||||||||||| | ||||||||||||    
T  34860204 agcttagctcaattgatagggatattgtatattatat 34860168  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 40716015 - 40715971
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatat 147  Q
    ||||||| |||||||||||||||||| |||||||| ||| |||||    
T  40716015 tcctcgtgagcttagctcaattgatatggacaatgcataatatat 40715971  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 31316628 - 31316680
Alignment:
Q  99 tttatcctcgtaagcttagctcaattgatagggacaatgtatattatatacaa 151  Q
    ||||||| ||| ||||||||||| |||||||||| | ||||||||||||||||    
T  31316628 tttatccccgtgagcttagctcagttgatagggatattgtatattatatacaa 31316680  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 21549036 - 21549077
Alignment:
Q  106 tcgtaagcttagctcaattgatagggacaatgtatattatat 147  Q
    |||||||||||||||| |||||| |||||||||||| |||||    
T  21549036 tcgtaagcttagctcagttgatatggacaatgtataatatat 21549077  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 29687072 - 29687121
Alignment:
Q  98 atttatcctcgtaagcttagctcaattgatagggacaatgtatattatat 147  Q
    |||| ||||||| ||||||||||| |||||| ||||||| ||||||||||    
T  29687072 atttgtcctcgtgagcttagctcagttgatatggacaatatatattatat 29687121  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 1238159 - 1238205
Alignment:
Q  105 ctcgtaagcttagctcaattgatagggacaatgtatattatatacaa 151  Q
    ||||| |||||| |||||||||||||||||||| ||| |||||||||    
T  1238159 ctcgtgagcttaactcaattgatagggacaatgcataatatatacaa 1238205  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 23983999 - 23984044
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatata 148  Q
    ||||||||||||||||||||||| || |||||||| ||| ||||||    
T  23983999 tcctcgtaagcttagctcaattggtatggacaatgcataatatata 23984044  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 30836370 - 30836301
Alignment:
Q  98 atttatcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac 167  Q
    |||| ||||||||||||||||||| |||  || ||||||| ||| ||| |||||||||  ||||||||||    
T  30836370 atttgtcctcgtaagcttagctcagttggcagagacaatgcataatatttacaaaattcagggttcaaac 30836301  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 27244652 - 27244696
Alignment:
Q  103 tcctcgtaagcttagctcaattgatagggacaatgtatattatat 147  Q
    ||||||| ||||||||||| ||||||||||||||| ||| |||||    
T  27244652 tcctcgtgagcttagctcagttgatagggacaatgcataatatat 27244696  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 34242825 - 34242881
Alignment:
Q  111 agcttagctcaattgatagggacaatgtatatta-tatacaaaattttgggttcaaa 166  Q
    ||||||||||||||||||||||||||| ||| || ||| |||| ||| |||||||||    
T  34242825 agcttagctcaattgatagggacaatgcataatattatgcaaagtttggggttcaaa 34242881  T

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