View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_54 (Length: 295)
Name: NF9879_high_54
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 23913433 - 23913696
Alignment:
| Q |
1 |
atcatattgatttggatcagcatcaaggtagctatcatattgatttggatcaaactcagaaaccaatatactccgttcttcaccgaagtggtagtaaccg |
100 |
Q |
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| T |
23913433 |
atcatattgatttggatcagcatcaaggtagctatcatattgatttggatcaaactcagaaaccaatatactccgttcttcaccaaagtggtagtaaccg |
23913532 |
T |
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| Q |
101 |
tttgtgaaatcactagctggaggaaagtttggatccatagttctgtttttctgtattttaagaaacagttaccgacattcaaatcactattgttgaggaa |
200 |
Q |
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| T |
23913533 |
tttgtgaaatcactagctggaggaaagtttggatccatagttctgtttttctgtattttaagaaacagttaccgacattcaaatcactattgttgaggaa |
23913632 |
T |
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| Q |
201 |
taactaatgaaaacttaaacaaaacatgaaatgggacagtgagaataaagtaatatgaaatggt |
264 |
Q |
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| T |
23913633 |
taactaatgaaaacttaaacaaagcatgaaatggaacagtgagaataaagtaatatgaaatggt |
23913696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23913400 - 23913451
Alignment:
| Q |
1 |
atcatattgatttggatcagcatcaaggtagctatcatattgatttggatca |
52 |
Q |
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| T |
23913400 |
atcatattgatttggatcagcctcaagaaagctatcatattgatttggatca |
23913451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 23913379 - 23913418
Alignment:
| Q |
13 |
tggatcagcatcaaggtagctatcatattgatttggatca |
52 |
Q |
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| T |
23913379 |
tggatcagcaccaaggaagctatcatattgatttggatca |
23913418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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