View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_61 (Length: 267)
Name: NF9879_high_61
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_61 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 27 - 248
Target Start/End: Original strand, 26955782 - 26955998
Alignment:
| Q |
27 |
tctctttcttatgatcttctccataactctttcttatgaagctttttcacccttctcatctgttacatccattcatttttctccttcttccactttgatt |
126 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26955782 |
tctctttcgtatgatcttctccataactctttcttatggagctttttcacccttcccatctgttacatccattcatttttctccttcttccactttgatt |
26955881 |
T |
|
| Q |
127 |
cgaaaatcatctacgccatgtcccttctgattcctttctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaactcgccg |
226 |
Q |
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|||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26955882 |
cgaaaatcataaacgccatgt-ccttctgattcc--tctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaact--ccg |
26955976 |
T |
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| Q |
227 |
atgaagctctcttctatggtat |
248 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
26955977 |
ataaagctctcttctatggtat |
26955998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 27 - 248
Target Start/End: Original strand, 40947052 - 40947268
Alignment:
| Q |
27 |
tctctttcttatgatcttctccataactctttcttatgaagctttttcacccttctcatctgttacatccattcatttttctccttcttccactttgatt |
126 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40947052 |
tctctttcgtatgatcttctccataactctttcttatggagctttttcacccttcccatctgttacatccattcatttttctccttcttccactttgatt |
40947151 |
T |
|
| Q |
127 |
cgaaaatcatctacgccatgtcccttctgattcctttctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaactcgccg |
226 |
Q |
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| T |
40947152 |
cgaaaatcataaacgccatgt-ccttctgattcc--tctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaact--ccg |
40947246 |
T |
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| Q |
227 |
atgaagctctcttctatggtat |
248 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
40947247 |
ataaagctctcttctatggtat |
40947268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 34314981 - 34315072
Alignment:
| Q |
157 |
ttcctttctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaactcgccgatgaagctctcttctatggtat |
248 |
Q |
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| T |
34314981 |
ttcctctctctcctccgcaccaaccaccttccctccactgcccgccgcttctccaaacaagaactcgccgacgaagctctcttctatggtat |
34315072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 22061074 - 22061025
Alignment:
| Q |
157 |
ttcctttctctcctccgcgccaaccacctcccctccactgcccgccgctt |
206 |
Q |
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| T |
22061074 |
ttcctctctctcctccgcaccaaccaccttccctccactagccgccgctt |
22061025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 11201137 - 11201185
Alignment:
| Q |
163 |
tctctcctccgcgccaaccacctcccctccactgcccgccgcttctcca |
211 |
Q |
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|||||||||| | |||||||||||||||||| | |||||||||||||| |
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| T |
11201137 |
tctctcctccacaccaaccacctcccctccatcgtccgccgcttctcca |
11201185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 33854029 - 33854183
Alignment:
| Q |
19 |
ccaaactctctctttcttatgatcttctccataactctttcttatgaagctttttcacccttctcatctgttacatccattcatttttctcc-------- |
110 |
Q |
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|||| ||||||||||||| ||||||||| ||| ||||||| |||| ||| |||||||||||| |||||||||| ||||||||| |||||| |
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| T |
33854029 |
ccaacctctctctttcttgtgatcttcttcatcgctctttcgtatggagccttttcacccttc-catctgttactgccattcattcttctccaatttcta |
33854127 |
T |
|
| Q |
111 |
-----ttcttccactttgattcgaaaatcatctacgccatgtcccttctgattcct |
161 |
Q |
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||| ||||||||||||| ||||||||| || ||||||||||||| |||||| |
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| T |
33854128 |
tcaccttcgtccactttgattctaaaatcatcaacaccatgtcccttctaattcct |
33854183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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