View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_high_62 (Length: 267)

Name: NF9879_high_62
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_high_62
NF9879_high_62
[»] chr3 (5 HSPs)
chr3 (26-253)||(43978456-43978683)
chr3 (127-185)||(16143551-16143609)
chr3 (179-253)||(43755618-43755692)
chr3 (179-218)||(51677597-51677636)
chr3 (195-252)||(42059845-42059902)
[»] chr7 (9 HSPs)
chr7 (121-185)||(21416409-21416473)
chr7 (179-253)||(11773195-11773269)
chr7 (146-253)||(27938810-27938915)
chr7 (179-251)||(11776381-11776453)
chr7 (128-176)||(27597818-27597866)
chr7 (180-251)||(45100236-45100307)
chr7 (25-71)||(40343290-40343336)
chr7 (128-185)||(36675700-36675757)
chr7 (148-176)||(27598167-27598195)
[»] chr8 (6 HSPs)
chr8 (147-253)||(5981737-5981841)
chr8 (139-185)||(18829838-18829884)
chr8 (146-253)||(2954510-2954616)
chr8 (195-253)||(5073032-5073090)
chr8 (179-253)||(5981476-5981550)
chr8 (27-67)||(33822159-33822199)
[»] chr4 (9 HSPs)
chr4 (146-251)||(47680673-47680777)
chr4 (118-185)||(34946373-34946440)
chr4 (128-174)||(2917162-2917208)
chr4 (128-185)||(53467981-53468038)
chr4 (179-231)||(16559358-16559410)
chr4 (153-253)||(26473611-26473710)
chr4 (147-219)||(51681334-51681405)
chr4 (179-253)||(11307324-11307398)
chr4 (128-185)||(11197052-11197109)
[»] chr2 (7 HSPs)
chr2 (180-253)||(19548194-19548267)
chr2 (179-253)||(10066581-10066655)
chr2 (26-74)||(11842003-11842051)
chr2 (122-185)||(22062773-22062836)
chr2 (29-76)||(28694522-28694569)
chr2 (25-71)||(11129525-11129571)
chr2 (28-64)||(36343366-36343402)
[»] chr5 (8 HSPs)
chr5 (121-185)||(13112364-13112428)
chr5 (134-185)||(13042370-13042421)
chr5 (121-185)||(13043112-13043176)
chr5 (121-185)||(13113108-13113172)
chr5 (26-70)||(40279714-40279758)
chr5 (179-221)||(11143157-11143199)
chr5 (128-185)||(13112818-13112875)
chr5 (204-252)||(13042590-13042638)
[»] chr1 (7 HSPs)
chr1 (196-253)||(50391942-50391999)
chr1 (148-253)||(4392197-4392300)
chr1 (195-253)||(11199973-11200031)
chr1 (161-251)||(43834547-43834636)
chr1 (179-251)||(26231689-26231761)
chr1 (25-76)||(9001586-9001637)
chr1 (183-252)||(15327907-15327976)
[»] scaffold0039 (1 HSPs)
scaffold0039 (185-251)||(29075-29141)
[»] chr6 (1 HSPs)
chr6 (128-177)||(11637997-11638047)
[»] scaffold1743 (1 HSPs)
scaffold1743 (195-236)||(200-241)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 43978456 - 43978683
Alignment:
Q  26 atataatttggaataaataaattttgttaaaatgacatataatttggaatgaagtgggtactaattaatcaattacaaaatactagttcgcaaccttgtt 125  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43978456 atataatttggaataaataaattttgctaaaatgacatataatttggaatggagtgggtactaattaatcaattataaaatactagttcgcaaccttgtt 43978555  T
Q  126 gaggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagagacttagatatcacatctccatccaaaaccttaaggcaatag 225  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43978556 gtggagtctggggagcgcttggagcggcaatgggttaaacgtctaggacccgttaagagacttagatatcacatctccacccaaaaccttaaggcaatag 43978655  T
Q  226 atatatgagtctcctatcttatatatcc 253  Q
     |||||||||||||| ||||||||||||    
T  43978656 gtatatgagtctcctctcttatatatcc 43978683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 16143609 - 16143551
Alignment:
Q  127 aggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    ||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||    
T  16143609 aggagtctggggagcgcttggagcggcaatggattaaacatttaggacccgttaagaga 16143551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 43755692 - 43755618
Alignment:
Q  179 taagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatcc 253  Q
    |||||||||||||  ||||||||||| | |||||||||||| ||||| ||||||  |  ||||||||||||||||    
T  43755692 taagagacttagaagtcacatctccacctaaaaccttaaggtaataggtatatggattccctatcttatatatcc 43755618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 51677636 - 51677597
Alignment:
Q  179 taagagacttagatatcacatctccatccaaaaccttaag 218  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  51677636 taagagacttagacatcacatctccatcaaaaaccttaag 51677597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 42059845 - 42059902
Alignment:
Q  195 cacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatc 252  Q
    |||||||||||||||||||||||| || ||| |||| | ||| ||| |||||||||||    
T  42059845 cacatctccatccaaaaccttaagacattaggtataagtgtcccctctcttatatatc 42059902  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 21416409 - 21416473
Alignment:
Q  121 ttgttgaggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    |||||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||    
T  21416409 ttgttggggagtctgggaagcgcttggagcgacaatgggttgaacatctaggacccgctaagaga 21416473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 11773195 - 11773269
Alignment:
Q  179 taagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatcc 253  Q
    |||||||||||||| ||||||||||||| |||||||||||||| ||  |||||| ||||||| | ||||||||||    
T  11773195 taagagacttagatgtcacatctccatcaaaaaccttaaggcattacgtatatgggtctcctttattatatatcc 11773269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 27938915 - 27938810
Alignment:
Q  146 ggagcggcaatgggttaaacgtctaggacccgttaagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatctt 245  Q
    |||||||||||| | | || ||||||||||  | ||||||||| || | ||||||| ||||||||||||||||||  ||| |||||||||||||| ||||    
T  27938915 ggagcggcaatgagctgaatgtctaggaccact-aagagactt-gacaccacatctacatccaaaaccttaaggctttaggtatatgagtctcctttctt 27938818  T
Q  246 atatatcc 253  Q
    ||||||||    
T  27938817 atatatcc 27938810  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 11776381 - 11776453
Alignment:
Q  179 taagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatat 251  Q
    ||||||||||||||  |||||||||| |||||||||||||| | ||  |||||| ||| ||| ||||||||||    
T  11776381 taagagacttagatgccacatctccacccaaaaccttaaggtattatgtatatgggtcccctctcttatatat 11776453  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 27597866 - 27597818
Alignment:
Q  128 ggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggaccc 176  Q
    |||||||||| ||||||||||||| ||||||||||||  ||||||||||    
T  27597866 ggagtctggggagcgcttggagcgacaatgggttaaatatctaggaccc 27597818  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 45100307 - 45100236
Alignment:
Q  180 aagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatat 251  Q
    |||||||||||| | |||||||||||| ||||| ||||| || ||| ||||||||||  || ||||||||||    
T  45100307 aagagacttagacaccacatctccatctaaaactttaagacattagttatatgagtcatctctcttatatat 45100236  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 40343336 - 40343290
Alignment:
Q  25 catataatttggaataaataaattttgttaaaatgacatataatttg 71  Q
    |||||||||| ||||||| |||||||  |||||||||||||||||||    
T  40343336 catataatttagaataaacaaattttactaaaatgacatataatttg 40343290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 36675757 - 36675700
Alignment:
Q  128 ggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    ||||| |||| |||||||| |||  |||||||| |||||||||||||| |||||||||    
T  36675757 ggagtatggggagcgcttgaagcatcaatgggtgaaacgtctaggacctgttaagaga 36675700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 27598195 - 27598167
Alignment:
Q  148 agcggcaatgggttaaacgtctaggaccc 176  Q
    |||||||||||||||||||||||||||||    
T  27598195 agcggcaatgggttaaacgtctaggaccc 27598167  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 5981737 - 5981841
Alignment:
Q  147 gagcggcaatgggttaaacgtctaggacccgttaagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatctta 246  Q
    ||||||||||||| ||||| || |||||| || |||||||||||| | |||||||||| |||||||||||||||||| | | |||| ||| ||| |||||    
T  5981737 gagcggcaatgggctaaacttcaaggaccagt-aagagacttagacaccacatctccacccaaaaccttaaggcaat-ggtttatgggtcccctctctta 5981834  T
Q  247 tatatcc 253  Q
    |||||||    
T  5981835 tatatcc 5981841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 18829838 - 18829884
Alignment:
Q  139 agcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||    
T  18829838 agcgcttggagcggcaatgggctaaacgtctaggacccgctaagaga 18829884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 2954510 - 2954616
Alignment:
Q  146 ggagcggcaatgggttaaacgtctaggacccgttaagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatctt 245  Q
    ||||||||||||||| ||||||| ||||||  | ||||||||||||   |||||||||| | ||||||||||||||  ||  ||||| |||| || ||||    
T  2954510 ggagcggcaatgggtcaaacgtccaggaccaat-aagagacttagacgccacatctccaccgaaaaccttaaggcatcaggcatatgggtcttctctctt 2954608  T
Q  246 atatatcc 253  Q
    ||||||||    
T  2954609 atatatcc 2954616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 5073090 - 5073032
Alignment:
Q  195 cacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatcc 253  Q
    |||||||||| |||||||||||||||| ||  |||||||| | ||| ||||||||||||    
T  5073090 cacatctccacccaaaaccttaaggcattacgtatatgagacgcctctcttatatatcc 5073032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 5981476 - 5981550
Alignment:
Q  179 taagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatcc 253  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||  || || ||| ||| ||| ||||||||||||    
T  5981476 taagagacttagacaccacatttccacccaaaaccttaaggcatcaggtacatgggtcccctctcttatatatcc 5981550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 33822199 - 33822159
Alignment:
Q  27 tataatttggaataaataaattttgttaaaatgacatataa 67  Q
    |||||||||||| |||||||||||| || ||||||||||||    
T  33822199 tataatttggaacaaataaattttgctagaatgacatataa 33822159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 47680777 - 47680673
Alignment:
Q  146 ggagcggcaatgggttaaacgtctaggacccgttaagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatctt 245  Q
    |||||| ||||| |||||||||| ||||||  | |||||||||||| | |||||||||| ||||||||||||||||  || |||||| ||||||| || |    
T  47680777 ggagcgacaatgagttaaacgtccaggaccaat-aagagacttagacaccacatctccacccaaaaccttaaggcatcaggtatatgggtctcctctcat 47680679  T
Q  246 atatat 251  Q
    ||||||    
T  47680678 atatat 47680673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 34946373 - 34946440
Alignment:
Q  118 accttgttgaggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    ||||||||| |||||||  |||||||||||||||||||| || ||||||||||||||||  |||||||    
T  34946373 accttgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagaga 34946440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 2917162 - 2917208
Alignment:
Q  128 ggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggac 174  Q
    |||||||||| |||| | |||||||||||||||||||||||||||||    
T  2917162 ggagtctggggagcgttgggagcggcaatgggttaaacgtctaggac 2917208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 53467981 - 53468038
Alignment:
Q  128 ggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    |||| |||||||| ||||| |||||||||||| ||||||||||||| | |||||||||    
T  53467981 ggagactgggaagtgcttgaagcggcaatgggctaaacgtctaggatctgttaagaga 53468038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 16559410 - 16559358
Alignment:
Q  179 taagagacttagatatcacatctccatccaaaaccttaaggcaatagatatat 231  Q
    ||||||||||||| | ||||||||||||||||| ||||||  |||||||||||    
T  16559410 taagagacttagacaccacatctccatccaaaatcttaagataatagatatat 16559358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 26473611 - 26473710
Alignment:
Q  153 caatgggttaaacgtctaggacccgttaagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatc 252  Q
    ||||||| |||||||| |||||||  ||||||||||||| | ||| |||||| | ||||||||||  ||  || |||||||||| ||| |||||||||||    
T  26473611 caatgggctaaacgtccaggaccctataagagacttagacaccacttctccacctaaaaccttaaaacatcaggtatatgagtc-cctctcttatatatc 26473709  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 51681405 - 51681334
Alignment:
Q  147 gagcggcaatgggttaaacgtctaggacccgttaagagacttagatatcacatctccatccaaaaccttaagg 219  Q
    |||||||||||||| ||| ||  |||||| || |||||||||||| | |||||||||| ||||||||||||||    
T  51681405 gagcggcaatgggtcaaatgttcaggacctgt-aagagacttagacaccacatctccacccaaaaccttaagg 51681334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 11307324 - 11307398
Alignment:
Q  179 taagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatcc 253  Q
    ||||||||||||| | |||||||||| ||||||| ||||||||  || |||| | ||| ||| ||||||||||||    
T  11307324 taagagacttagacaccacatctccacccaaaacattaaggcatcaggtatacgtgtcccctctcttatatatcc 11307398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 11197109 - 11197052
Alignment:
Q  128 ggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    |||||||||| |||| |||||||||||||||| |||||  |||||||| | |||||||    
T  11197109 ggagtctggggagcgtttggagcggcaatgggctaaacacctaggaccagctaagaga 11197052  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 19548267 - 19548194
Alignment:
Q  180 aagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatcc 253  Q
    |||||||||| | | |||||||||| ||||||||||||| || |||||||||| ||||||| ||||||||||||    
T  19548267 aagagacttatacaccacatctccacccaaaaccttaagacattagatatatgggtctcctctcttatatatcc 19548194  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 10066655 - 10066581
Alignment:
Q  179 taagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatcc 253  Q
    ||||||| ||| ||| |||||||||| |||||| ||||||||| ||| ||||||  |||||||||||||||||||    
T  10066655 taagagatttatataccacatctccacccaaaatcttaaggcattaggtatatggatctcctatcttatatatcc 10066581  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 11842051 - 11842003
Alignment:
Q  26 atataatttggaataaataaattttgttaaaatgacatataatttggaa 74  Q
    |||||||||| || ||| |||||||||||||||||||||||||||||||    
T  11842051 atataatttgaaacaaagaaattttgttaaaatgacatataatttggaa 11842003  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 22062773 - 22062836
Alignment:
Q  122 tgttgaggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    ||||| |||||| ||| ||| ||||||||||||||| | ||||| | |||||||||||||||||    
T  22062773 tgttggggagtccggggagcacttggagcggcaatgagctaaacatttaggacccgttaagaga 22062836  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 28694522 - 28694569
Alignment:
Q  29 taatttggaataaataaattttgttaaaatgacatataatttggaatg 76  Q
    |||||||||| |||||||||||| |||||| ||||||||||| |||||    
T  28694522 taatttggaacaaataaattttgctaaaataacatataatttagaatg 28694569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 11129571 - 11129525
Alignment:
Q  25 catataatttggaataaataaattttgttaaaatgacatataatttg 71  Q
    |||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  11129571 catataatttagaacaaacaaattttgttagaatgacatataatttg 11129525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 36343366 - 36343402
Alignment:
Q  28 ataatttggaataaataaattttgttaaaatgacata 64  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  36343366 ataatttggaacaaacaaattttgttaaaatgacata 36343402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 13112428 - 13112364
Alignment:
Q  121 ttgttgaggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    |||||| ||||  |||| ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  13112428 ttgttggggaggttggggagcgcttggagcgacaatgggttaaacgtctaggacccgctaagaga 13112364  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 13042421 - 13042370
Alignment:
Q  134 tgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| |||||||    
T  13042421 tggggagcgcttggagcgacaatgggttaaacgtctaggacccgctaagaga 13042370  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 13043176 - 13043112
Alignment:
Q  121 ttgttgaggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    |||||||| |||| ||| |||||||||||| |||||||| |||| |||||||||| | |||||||    
T  13043176 ttgttgagaagtccggggagcgcttggagcagcaatgggctaaatgtctaggacctgctaagaga 13043112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 13113172 - 13113108
Alignment:
Q  121 ttgttgaggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    |||||||| |||| ||| |||||||||||| |||||||| |||| |||||||||| | |||||||    
T  13113172 ttgttgagaagtccggggagcgcttggagcagcaatgggctaaatgtctaggacctgctaagaga 13113108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 40279714 - 40279758
Alignment:
Q  26 atataatttggaataaataaattttgttaaaatgacatataattt 70  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||    
T  40279714 atataatttgaaataaacaaattttgttagaatgacatataattt 40279758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 11143199 - 11143157
Alignment:
Q  179 taagagacttagatatcacatctccatccaaaaccttaaggca 221  Q
    ||||||||||| | |||||||||| ||||||||||||||||||    
T  11143199 taagagacttaaacatcacatctctatccaaaaccttaaggca 11143157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 13112875 - 13112818
Alignment:
Q  128 ggagtctgggaagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 185  Q
    |||||||||| |||||| | |||| ||||||| |||| |||||||||||| |||||||    
T  13112875 ggagtctggggagcgctggaagcgacaatgggctaaatgtctaggacccgctaagaga 13112818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 13042638 - 13042590
Alignment:
Q  204 atccaaaaccttaaggcaatagatatatgagtctcctatcttatatatc 252  Q
    |||||||||||||||||||| | | |||| ||||||| |||||||||||    
T  13042638 atccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatc 13042590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 50391942 - 50391999
Alignment:
Q  196 acatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatcc 253  Q
    ||||||||||||||||||||||| || ||| |||||||||| | ||||||||||||||    
T  50391942 acatctccatccaaaaccttaagacattaggtatatgagtcacatatcttatatatcc 50391999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 253
Target Start/End: Original strand, 4392197 - 4392300
Alignment:
Q  148 agcggcaatgggttaaacgtctaggacccgttaagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttat 247  Q
    ||||||||||||| ||||||| ||||||   ||||  ||||| | | ||||||||||||||||| |||||||||  || |||||| ||||||| | ||||    
T  4392197 agcggcaatgggtcaaacgtcaaggacca--taagtcacttatacaccacatctccatccaaaatcttaaggcatcaggtatatgggtctcctctgttat 4392294  T
Q  248 atatcc 253  Q
    ||||||    
T  4392295 atatcc 4392300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 11200031 - 11199973
Alignment:
Q  195 cacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatcc 253  Q
    |||||||||| |||||||||||||||| |||  ||||||||| ||| ||||||||||||    
T  11200031 cacatctccacccaaaaccttaaggcattaggcatatgagtcacctctcttatatatcc 11199973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 43834636 - 43834547
Alignment:
Q  161 taaacgtctaggacccgttaagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatat 251  Q
    |||||||||||||||  | ||||||||||||   |||||||||||| ||||||||||| || ||| |||||| ||| ||| ||||||||||    
T  43834636 taaacgtctaggacca-tcaagagacttagacgccacatctccatcaaaaaccttaagacattaggtatatgggtcccctctcttatatat 43834547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 26231689 - 26231761
Alignment:
Q  179 taagagacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatat 251  Q
    |||||||||| || | |||||||||| |||||||||||||| ||| | |||||| ||| ||| ||||||||||    
T  26231689 taagagacttggacaccacatctccacccaaaaccttaaggtaattggtatatgggtcccctctcttatatat 26231761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 9001637 - 9001586
Alignment:
Q  25 catataatttggaataaataaattttgttaaaatgacatataatttggaatg 76  Q
    ||||||||||  || ||| ||||||||||||||||||||||||||| |||||    
T  9001637 catataatttaaaacaaacaaattttgttaaaatgacatataatttagaatg 9001586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 15327976 - 15327907
Alignment:
Q  183 agacttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatatc 252  Q
    ||||||||| | |||||||||| ||||||||| ||| ||| || |||||| ||| ||| |||||||||||    
T  15327976 agacttagacaccacatctccacccaaaacctcaagacaacaggtatatgggtcccctctcttatatatc 15327907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 29141 - 29075
Alignment:
Q  185 acttagatatcacatctccatccaaaaccttaaggcaatagatatatgagtctcctatcttatatat 251  Q
    ||||||| | |||||||||| |||||| |||||| ||  ||||||||||||| ||| ||||||||||    
T  29141 acttagacaccacatctccacccaaaatcttaagacatcagatatatgagtcccctctcttatatat 29075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 11637997 - 11638047
Alignment:
Q  128 ggagtctgggaagcgcttgg-agcggcaatgggttaaacgtctaggacccg 177  Q
    ||||||| || ||||||||| ||||| ||||||||||||||||||||||||    
T  11637997 ggagtcttgggagcgcttgggagcggtaatgggttaaacgtctaggacccg 11638047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 200 - 241
Alignment:
Q  195 cacatctccatccaaaaccttaaggcaatagatatatgagtc 236  Q
    ||||||||||||| |||||||||| || ||||||||||||||    
T  200 cacatctccatcctaaaccttaagacattagatatatgagtc 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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