View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_72 (Length: 250)
Name: NF9879_high_72
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_72 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28607259 - 28607498
Alignment:
| Q |
1 |
ttcaaggaccaatttaggggatcaatctaattgttcattagtgaaaggtgacaaattaaagctttgcgtagattatcccacataaactagtgtcaagggg |
100 |
Q |
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| T |
28607259 |
ttcaaggaccaatttaggggatcaatctaattgttcattagtgaagggtgacaaattaaagctttgcgtagattagcccacataaactagtgtcaagggg |
28607358 |
T |
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| Q |
101 |
attcgaacctgtgactttgatttcttatgtcagtgtttcacaaagacatccccttgcaaaacaatgatagtccgactaacatgctatcaaattagtagac |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607359 |
attcgaacctgtgactttgatttcttatgtcagcgtttcacaaagacatccccttgcaaaacaatgatagtccgactaacatgctatcaaattagtagac |
28607458 |
T |
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| Q |
201 |
atctacatcaatcaactgaaccaattagatatggcctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
28607459 |
atctacatcaatcaactgaaccaattagatatggcctttg |
28607498 |
T |
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