View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_74 (Length: 250)
Name: NF9879_high_74
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_74 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 881397 - 881165
Alignment:
| Q |
1 |
aggtgaaatggcaggagtgtgcctgaatcatatatctcgagagtccaacgacataaaccgccttgccaaattctatcaagaggtaaccactcatcacata |
100 |
Q |
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| T |
881397 |
aggtgaaatggcaggagtgtgcctgaatcatatatctcgagagtccaacgacataaaccgccttgccaaattctatcaagaggtaaccactgatcacata |
881298 |
T |
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| Q |
101 |
acaacttatttgtctcaattaaaattcacatgtttggaat-ttttattgtatgattttcagatatttggatttgaagaagtagaaagccccaagttcgga |
199 |
Q |
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| T |
881297 |
acaacttgtttgtctcaatcaaaattcacatatttggaattttttattgtatgattttcagatatttggatttgaagaagtagaaagccccaagttcgga |
881198 |
T |
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| Q |
200 |
gagtttaaggttgtatggctacgtgttccatct |
232 |
Q |
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| T |
881197 |
gagtttaaggttgtatggctacgtgttccatct |
881165 |
T |
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