View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_high_75 (Length: 250)

Name: NF9879_high_75
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_high_75
NF9879_high_75
[»] chr4 (15 HSPs)
chr4 (1-239)||(27445974-27446212)
chr4 (1-239)||(27556454-27556708)
chr4 (131-239)||(27559315-27559423)
chr4 (158-239)||(27502882-27502963)
chr4 (91-210)||(27500442-27500558)
chr4 (152-239)||(27424589-27424676)
chr4 (91-213)||(27526213-27526332)
chr4 (151-214)||(27419171-27419234)
chr4 (151-214)||(27422035-27422098)
chr4 (158-213)||(27479885-27479940)
chr4 (151-214)||(27571600-27571663)
chr4 (151-213)||(27414405-27414467)
chr4 (93-135)||(27563543-27563585)
chr4 (158-239)||(17970283-17970364)
chr4 (158-215)||(27513875-27513932)
[»] chr3 (12 HSPs)
chr3 (152-229)||(50913474-50913551)
chr3 (152-196)||(38035033-38035077)
chr3 (152-197)||(38032260-38032305)
chr3 (152-197)||(38038525-38038570)
chr3 (158-210)||(55084770-55084822)
chr3 (152-199)||(38041918-38041965)
chr3 (158-207)||(38024982-38025031)
chr3 (152-197)||(38027433-38027478)
chr3 (158-207)||(38028873-38028922)
chr3 (158-207)||(38031434-38031483)
chr3 (158-207)||(38040188-38040237)
chr3 (158-210)||(50911973-50912025)
[»] chr8 (2 HSPs)
chr8 (152-197)||(21608235-21608280)
chr8 (158-207)||(21607403-21607452)
[»] chr2 (1 HSPs)
chr2 (158-239)||(3073553-3073634)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27445974 - 27446212
Alignment:
Q  1 agcagcaacacaattcaagttactcacaaatacaaattcaaatatttctttcttacatacacaagctgttagtgtgttgtaactcataataacaatgggc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27445974 agcagcaacacaattcaagttactcacaaatacaaattaaaatatttctttcttacatacacaagatgttagtgtgttgtaactcataataacaatgggc 27446073  T
Q  101 tttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagc 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27446074 tttcgtttacctggtatcattagacggtcatcatcttccaaggctgtggatgaagtcccaaaaggctatcttgcggtttatgttggagaaaaaatgaagc 27446173  T
Q  201 gatttgtgattccaacttcattattgaatcaaccttcat 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27446174 gatttgtgattccaacttcattattgaatcaaccttcat 27446212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 27556708 - 27556454
Alignment:
Q  1 agcagcaacacaattcaagttactcacaaa-tacaaattcaaatatttctttcttacatacacaagctgtt------------agtgtgttgtaactcat 87  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||            ||||||||| |||||||    
T  27556708 agcagcaatacaattcaagtcactcacaaaatacaaattcaaatatttctttctttcatacaaaagctgttgtattcattgttagtgtgttgcaactcat 27556609  T
Q  88 aataa----caat--gggctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttat 181  Q
    |||||    ||||  ||| |||| ||||||||||||   |||| ||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||    
T  27556608 aataattaacaatatgggttttcacttacctggtat---tagaaggtcatcctcttccaaggctgtggatgaagtcccaaaaggctatctcgcagtttat 27556512  T
Q  182 gttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 239  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  27556511 gttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcat 27556454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 27559423 - 27559315
Alignment:
Q  131 tcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatc 230  Q
    |||||||||||| ||||| ||| | |||||||||||||||| || |||||||||||||| ||||||||| ||||| ||||||| | ||||||||||||||    
T  27559423 tcatcttccaagactgtggatggaatcccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatc 27559324  T
Q  231 aaccttcat 239  Q
    || ||||||    
T  27559323 aatcttcat 27559315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 239
Target Start/End: Complemental strand, 27502963 - 27502882
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 239  Q
    |||||||| |||||||| |||||||| |||||||| |||||||| |||||||||||||  ||||  ||||||||| ||||||    
T  27502963 ccaaaaggatatcttgccgtttatgtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcat 27502882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 27500558 - 27500442
Alignment:
Q  91 aacaatgggctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagag 190  Q
    ||||||||| ||||| |||||| ||||||| | | ||||||||||||| ||  |||||   || || |||||||| ||||| || || || || ||||||    
T  27500558 aacaatgggttttcgtttacctagtatcatcaaaaggtcatcatcttcaaaatctgtg---gacgtaccaaaaggatatctagcagtgtacgtaggagag 27500462  T
Q  191 aaaatgaagcgatttgtgat 210  Q
    ||||||||||||||||||||    
T  27500461 aaaatgaagcgatttgtgat 27500442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 27424676 - 27424589
Alignment:
Q  152 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 239  Q
    |||||||||||||||||||| || || |||||||||||  |||||| ||| ||||||||||||   ||||  ||||| ||||||||||    
T  27424676 gaagtcccaaaaggctatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcat 27424589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 27526332 - 27526213
Alignment:
Q  91 aacaatgggctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagag 190  Q
    ||||||||| ||||| |||||| ||||||| | | || |||||||||| || | |||  |||   | ||||| || ||||| || || ||||||||||||    
T  27526332 aacaatgggttttcgtttacctagtatcatcaaaagggcatcatcttcaaaaggtgtcgatg---ttccaaagggatatctagcagtgtatgttggagag 27526236  T
Q  191 aaaatgaagcgatttgtgattcc 213  Q
    ||||||||||| |||||||||||    
T  27526235 aaaatgaagcggtttgtgattcc 27526213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 27419234 - 27419171
Alignment:
Q  151 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcca 214  Q
    ||||||||||||||||||||| || || ||||||||||| | ||||| ||| || |||||||||    
T  27419234 tgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattcca 27419171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 27422098 - 27422035
Alignment:
Q  151 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcca 214  Q
    ||||||||||||||||||||| || || ||||||||||| | |||||| || || |||||||||    
T  27422098 tgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaaacggttcgtgattcca 27422035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 27479885 - 27479940
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcc 213  Q
    |||||||||||||| || || || || ||||||||||||||||| |||||||||||    
T  27479885 ccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcc 27479940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 27571600 - 27571663
Alignment:
Q  151 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcca 214  Q
    ||||||||||||||||||||| || || ||||||||||| | ||||| ||| || |||||||||    
T  27571600 tgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattcca 27571663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 27414467 - 27414405
Alignment:
Q  151 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcc 213  Q
    |||||| ||||||||||||||||| || || |||||||| |||||||  || |||||||||||    
T  27414467 tgaagtgccaaaaggctatcttgcagtctacgttggagataaaatgagacggtttgtgattcc 27414405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 27563585 - 27563543
Alignment:
Q  93 caatgggctttcgcttacctggtatcattagacggtcatcatc 135  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||    
T  27563585 caatgggttttcgtttacctggtatcattagaaggtcatcatc 27563543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 17970283 - 17970364
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 239  Q
    ||||| || ||||||||||| || ||||||||| |||||||||| |||||||| || || ||||  ||||| ||| ||||||    
T  17970283 ccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcat 17970364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 27513932 - 27513875
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaa 215  Q
    |||||||| ||||| || || ||||| ||||||||||||||||| |||||||| ||||    
T  27513932 ccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaa 27513875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 50913474 - 50913551
Alignment:
Q  152 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaat 229  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| | ||  |||||||||  ||||| ||||||    
T  50913474 gaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaat 50913551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 38035033 - 38035077
Alignment:
Q  152 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatg 196  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||    
T  38035033 gaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatg 38035077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 38032260 - 38032305
Alignment:
Q  152 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 197  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatga 38032305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 38038525 - 38038570
Alignment:
Q  152 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 197  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||    
T  38038525 gaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatga 38038570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 55084770 - 55084822
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgat 210  Q
    |||||||| | |||||| || ||||||||||||||||||||||| ||||||||    
T  55084770 ccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgat 55084822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 38041918 - 38041965
Alignment:
Q  152 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaag 199  Q
    |||||||||||||||||| | ||||| |||||||||||| ||||||||    
T  38041918 gaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaag 38041965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 38025031 - 38024982
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 207  Q
    ||||| ||||||||||| || |||||||||||| |||||||||| |||||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgt 38024982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 38027433 - 38027478
Alignment:
Q  152 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 197  Q
    ||||| ||||||||| ||||||| || |||||||||||||||||||    
T  38027433 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatga 38027478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 38028922 - 38028873
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 207  Q
    ||||| ||||||||||| || || ||||||||| ||||||||||||||||    
T  38028922 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgt 38028873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 38031483 - 38031434
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 207  Q
    ||||| ||||||||||| || |||||||||||| |||||||||| |||||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgt 38031434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 38040237 - 38040188
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 207  Q
    ||||| ||||||||||| || || ||||||||| ||||||||||||||||    
T  38040237 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgt 38040188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 50912025 - 50911973
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgat 210  Q
    ||||| |||||||||||||| ||||||||||| || ||||| || ||||||||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgat 50911973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 21608235 - 21608280
Alignment:
Q  152 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 197  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatga 21608280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 21607452 - 21607403
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 207  Q
    ||||| || ||||||||||| |||||||||||| |||||||||| |||||    
T  21607452 ccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgt 21607403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 3073553 - 3073634
Alignment:
Q  158 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 239  Q
    ||||| || ||||||||||| || ||||||||| |||||||||| |||||||| || || ||||  ||||| ||| ||||||    
T  3073553 ccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcat 3073634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University