View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_79 (Length: 242)
Name: NF9879_high_79
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_79 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 42113650 - 42113438
Alignment:
| Q |
14 |
gcagagattggcttgttgagtaatatctagagagggtgaaagtggatatagatattttctccggaaaaaaggtaaccggaaaagttcaatgatgcaccag |
113 |
Q |
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| T |
42113650 |
gcagagattggcttgttgagtaatatctagggagggtgaaagtggatatagatattttctccggaaaaaaggtaaccggaaaagttcaatgatgcaccag |
42113551 |
T |
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| Q |
114 |
aagaagatgaaaagtacgaggaggaaacgtacggtccaaagagagttaaagccttgaagataggttaaagattttgatttcaaacggagatggaaaataa |
213 |
Q |
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| T |
42113550 |
aagaagatgaaaagtacgaggaggaaacgtacggtccaaagagagttaaagccttgaagataggttaaagattttgatttcaaacggagatggaaaataa |
42113451 |
T |
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| Q |
214 |
aacaaagagataa |
226 |
Q |
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| T |
42113450 |
aacaaagagataa |
42113438 |
T |
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