View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_high_8 (Length: 561)

Name: NF9879_high_8
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_high_8
NF9879_high_8
[»] chr3 (16 HSPs)
chr3 (17-556)||(5159596-5160138)
chr3 (358-556)||(5155916-5156108)
chr3 (406-513)||(46479503-46479610)
chr3 (400-556)||(51942837-51942993)
chr3 (419-507)||(46544183-46544271)
chr3 (400-492)||(47397648-47397740)
chr3 (402-513)||(46497654-46497765)
chr3 (400-479)||(46490417-46490496)
chr3 (447-501)||(46526742-46526796)
chr3 (424-503)||(46538714-46538794)
chr3 (402-492)||(4581748-4581838)
chr3 (435-501)||(46549304-46549370)
chr3 (402-507)||(46473638-46473743)
chr3 (447-507)||(45884046-45884106)
chr3 (457-501)||(45902718-45902762)
chr3 (457-492)||(4614165-4614200)
[»] chr8 (4 HSPs)
chr8 (400-556)||(9692980-9693135)
chr8 (400-507)||(9676007-9676114)
chr8 (20-52)||(30758360-30758392)
chr8 (425-492)||(21464516-21464583)
[»] chr4 (3 HSPs)
chr4 (400-513)||(35162146-35162259)
chr4 (360-501)||(35155082-35155226)
chr4 (402-483)||(28286744-28286825)
[»] chr7 (5 HSPs)
chr7 (426-549)||(17708006-17708129)
chr7 (426-501)||(17717830-17717905)
chr7 (426-556)||(16721883-16722013)
chr7 (426-556)||(17698897-17699027)
chr7 (426-495)||(17735660-17735729)
[»] chr2 (2 HSPs)
chr2 (434-534)||(20358870-20358970)
chr2 (402-513)||(20169337-20169448)
[»] chr5 (1 HSPs)
chr5 (17-52)||(3781215-3781250)


Alignment Details
Target: chr3 (Bit Score: 444; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 556
Target Start/End: Original strand, 5159596 - 5160138
Alignment:
Q  17 aagaatatgtcttggaggaaccaagcagtctgtcaataacaccaatccaagtatacccttttattgcctagttggatgtttatatgataccaaagcttct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5159596 aagaatatgtcttggaggaaccaagcagtctgtcaataacaccaatccaagtatacccttttattgcctagttggatgtttatatgataccaaagcttct 5159695  T
Q  117 aaataccaagttgcataagatagatcgtcatcactgtctccttttaataaaaatactaattgnnnnnnnaagcacaaagtggtcatagttataatgtatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  5159696 aaataccaagttgcataagatagatcgtcatcactgtctccttttaataaaaatactaattgtttttttaagcacaaagtggtcatagttataatgtatg 5159795  T
Q  217 tccatcttgtatatttggaggtacgaatttctttatatttta---gtacaacttcatgactttggtgattggtaaaactattttgaataacaaaactttg 313  Q
    ||||||||||||||||||||||||||||| |||||||||||    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  5159796 tccatcttgtatatttggaggtacgaattactttatattttgatggtacaacttcattactttggtgattggtaaagctattttgaataacaaaactttg 5159895  T
Q  314 ttattcaaatgcctcttcaaataaactttcatgatcctttagcataatttcttctattgaattacttccaaaaagaatctatttgttctatttgcataat 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5159896 ttattcaaatgcctcttcaaataaactttcatgatcctttagcataatttcttctattgaattacttccaaaaagaatctatttgttctatttgcataat 5159995  T
Q  414 tgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttataaaagaccttct 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||||    
T  5159996 tgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaaagagacaaatggccttattaaagaacttct 5160095  T
Q  514 cccccaaagatcagttgatagctaaacccgcctcatctctgct 556  Q
     || | ||||||||||||||| | |||| | ||||||| ||||    
T  5160096 tcctctaagatcagttgataggttaaccagactcatctttgct 5160138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 358 - 556
Target Start/End: Original strand, 5155916 - 5156108
Alignment:
Q  358 taatttcttctattgaattacttccaaaaagaatctatttgttctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgact 457  Q
    |||||| |||||||||| |||||||||||||||| ||||||||||||      | | |||||||||||||||| | ||||| |||||| |||||||||||    
T  5155916 taatttgttctattgaaatacttccaaaaagaatttatttgttctat------agtggatttttaaatttgatttggttttaaaggctgttgaagtgact 5156009  T
Q  458 aaagaagtgaatttatgggctgaaaacgagacaaagggccttataaaagaccttctcccccaaagatcagttgatagctaaacccgcctcatctctgct 556  Q
    ||||||| |||||||||||||||||| |||||||| |||||||| ||||| ||||| || | ||||||||||||||||| |||||||||||||| ||||    
T  5156010 aaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacccgcctcatctttgct 5156108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 406 - 513
Target Start/End: Original strand, 46479503 - 46479610
Alignment:
Q  406 tgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttataaaa 505  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||||| || |||||||||| |||||||||||| |||||||| |||||||| |||    
T  46479503 tgcataattgatttttaaatttgatatggttttaaaggctgttgaagtgaccaatgaagtgaattcatgggctgaaaaagagacaaatggccttattaaa 46479602  T
Q  506 gaccttct 513  Q
    || |||||    
T  46479603 gaacttct 46479610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 400 - 556
Target Start/End: Original strand, 51942837 - 51942993
Alignment:
Q  400 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggcctt 499  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||   ||||||  ||| ||||||||  |||||| |||||| |||||||| ||||||    
T  51942837 tctatttgcataattgatttttaaatttgatatggttttttaggctccagaagtgcgtaaggaagtgaacatatgggttgaaaaagagacaaatggcctt 51942936  T
Q  500 ataaaagaccttctcccccaaagatcagttgatagctaaacccgcctcatctctgct 556  Q
    || ||||| ||| | || | | ||||||||||||||| |||  ||||||||| ||||    
T  51942937 attaaagaacttattcctccaggatcagttgatagcttaactagcctcatctttgct 51942993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 419 - 507
Target Start/End: Original strand, 46544183 - 46544271
Alignment:
Q  419 tttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttataaaaga 507  Q
    |||| ||||||| ||||||| |||||| |||||| ||  |||||||||||||||||||||||||| |||||||| || |||||||||||    
T  46544183 tttatatttgatgttgttttaaaggcttttgaagggagaaaagaagtgaatttatgggctgaaaaagagacaaatggtcttataaaaga 46544271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 400 - 492
Target Start/End: Complemental strand, 47397740 - 47397648
Alignment:
Q  400 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaa 492  Q
    ||||||||||||| ||||||||||||||||||| | ||| ||||||  ||||||| |||||||||| |||||||||||  |||| ||||||||    
T  47397740 tctatttgcataactgatttttaaatttgatatgggtttaaaggctgatgaagtggctaaagaagtaaatttatgggccaaaaatgagacaaa 47397648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 402 - 513
Target Start/End: Original strand, 46497654 - 46497765
Alignment:
Q  402 tatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttat 501  Q
    |||||| |||||||||||| |  |||||||| ||||| |||||| |||||||||  || ||||||||||||||||||||||  |||||||| || |||||    
T  46497654 tatttggataattgattttaatttttgatatggttttaaaggctgttgaagtgaacaatgaagtgaatttatgggctgaaagagagacaaatggtcttat 46497753  T
Q  502 aaaagaccttct 513  Q
     ||||| |||||    
T  46497754 taaagaacttct 46497765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 400 - 479
Target Start/End: Original strand, 46490417 - 46490496
Alignment:
Q  400 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctg 479  Q
    |||||||| |||||||||||| || |||||||| ||||| ||||| | ||||||| | ||||||||||||||||||||||    
T  46490417 tctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctg 46490496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 447 - 501
Target Start/End: Complemental strand, 46526796 - 46526742
Alignment:
Q  447 ttgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttat 501  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||    
T  46526796 ttgaagtgattaaagaagtgaatttatgggctgaaaaagagacaaatggccttat 46526742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 503
Target Start/End: Original strand, 46538714 - 46538794
Alignment:
Q  424 atttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctg-aaaacgagacaaagggccttataa 503  Q
    ||||||||||||||| |||||  |||||||||  |||||||||||||| ||||||| ||||  ||||||| ||||||||||    
T  46538714 atttgatattgttttaaaggcacttgaagtgagaaaagaagtgaatttgtgggctgaaaaaaaagacaaatggccttataa 46538794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 492
Target Start/End: Complemental strand, 4581838 - 4581748
Alignment:
Q  402 tatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaa 492  Q
    ||||||| ||| ||||||||  ||||  ||| ||||| |||||||  ||||||  | ||||||||||||||||||||||||| ||||||||    
T  4581838 tatttgcttaactgatttttgtattttttatggttttaaaggctaccgaagtgcttcaagaagtgaatttatgggctgaaaaagagacaaa 4581748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 501
Target Start/End: Complemental strand, 46549370 - 46549304
Alignment:
Q  435 ttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttat 501  Q
    |||| ||||| | ||||||| | |||||||||||||||||||||||||| |||||||| || |||||    
T  46549370 ttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgaaaaagagacaaatggtcttat 46549304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 507
Target Start/End: Original strand, 46473638 - 46473743
Alignment:
Q  402 tatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttat 501  Q
    ||||||||||||| ||||| |||||||||||  ||||   |  | |||||||||| || ||||||||  ||||||||||||| |||||||| || |||||    
T  46473638 tatttgcataattaattttaaaatttgatatctttttattgtttgttgaagtgaccaatgaagtgaacatatgggctgaaaaagagacaaatggtcttat 46473737  T
Q  502 aaaaga 507  Q
     |||||    
T  46473738 taaaga 46473743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 507
Target Start/End: Complemental strand, 45884106 - 45884046
Alignment:
Q  447 ttgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttataaaaga 507  Q
    |||||||||| || || |||||||||||||||||||| |||||||| || ||||| |||||    
T  45884106 ttgaagtgaccaatgacgtgaatttatgggctgaaaaagagacaaatggtcttattaaaga 45884046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 501
Target Start/End: Original strand, 45902718 - 45902762
Alignment:
Q  457 taaagaagtgaatttatgggctgaaaacgagacaaagggccttat 501  Q
    |||| |||||||||||||||||||||| |||||||| ||||||||    
T  45902718 taaaaaagtgaatttatgggctgaaaaagagacaaatggccttat 45902762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 492
Target Start/End: Complemental strand, 4614200 - 4614165
Alignment:
Q  457 taaagaagtgaatttatgggctgaaaacgagacaaa 492  Q
    ||||||||||||||||||||||||||| ||||||||    
T  4614200 taaagaagtgaatttatgggctgaaaaagagacaaa 4614165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 400 - 556
Target Start/End: Complemental strand, 9693135 - 9692980
Alignment:
Q  400 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggcctt 499  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||||    
T  9693135 tctatttgcataactgatttttaaatttgatat-gttttaaaggctattgaagtgactaaacaagtgaatttatgggctgaaaaagagacatatggcctt 9693037  T
Q  500 ataaaagaccttctcccccaaagatcagttgatagctaaacccgcctcatctctgct 556  Q
    || |||||  |||| || |||   |||||||| |||| |||| | ||||||| ||||    
T  9693036 attaaagaaattcttcctcaagcgtcagttgacagcttaaccagactcatctttgct 9692980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 400 - 507
Target Start/End: Complemental strand, 9676114 - 9676007
Alignment:
Q  400 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggcctt 499  Q
    |||||||| |||| |||||||||||||||||||| | || ||||||||||||||||||||||| |||||||||||||||||||| || ||| | ||||||    
T  9676114 tctatttgaataactgatttttaaatttgatattttatttaaggctattgaagtgactaaagaggtgaatttatgggctgaaaaagaaacatacggcctt 9676015  T
Q  500 ataaaaga 507  Q
    || |||||    
T  9676014 attaaaga 9676007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 30758360 - 30758392
Alignment:
Q  20 aatatgtcttggaggaaccaagcagtctgtcaa 52  Q
    |||||||||||||||||||||||||||||||||    
T  30758360 aatatgtcttggaggaaccaagcagtctgtcaa 30758392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 492
Target Start/End: Complemental strand, 21464583 - 21464516
Alignment:
Q  425 tttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaa 492  Q
    |||||||||||||| |||||| | |||| |||  ||||||  ||||||||||||||||| ||||||||    
T  21464583 tttgatattgttttaaaggctctcgaagcgacagaagaagcaaatttatgggctgaaaaagagacaaa 21464516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 513
Target Start/End: Original strand, 35162146 - 35162259
Alignment:
Q  400 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggcctt 499  Q
    ||||||||||| | |||||| ||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  35162146 tctatttgcattactgatttgtaaatttgacatggttttaaaggctattgaagtgactaaagaagtgaatttatgggctgaaaaagaaacaaatggcctt 35162245  T
Q  500 ataaaagaccttct 513  Q
    || ||||| |||||    
T  35162246 attaaagaacttct 35162259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 360 - 501
Target Start/End: Original strand, 35155082 - 35155226
Alignment:
Q  360 atttcttctattgaattacttccaaaaagaatctatttgttctatttgcataattgatttttaaatttgat----attgttttgaaggctattgaagtga 455  Q
    ||||||||||||||| |||||   || |||||  | ||| |||| |||||||| |||||| ||||||||||    || ||||||||||||||||||||||    
T  35155082 atttcttctattgaaatacttgtgaagagaattcaattgatcta-ttgcataactgatttataaatttgattgacatggttttgaaggctattgaagtga 35155180  T
Q  456 ctaaagaagtgaatttatgggctgaaaacgagacaaagggccttat 501  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||||    
T  35155181 ctaaagaagtgaatttatgggctaaaaaagagacaaatggccttat 35155226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 28286825 - 28286744
Alignment:
Q  402 tatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaa 483  Q
    ||||| ||||| ||||||||  | ||||||| ||||  |||| | |||||||||| |||||||| |||||||||||||||||    
T  28286825 tatttccataactgatttttgtacttgatatggtttcaaaggttgttgaagtgacaaaagaagtaaatttatgggctgaaaa 28286744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 426 - 549
Target Start/End: Original strand, 17708006 - 17708129
Alignment:
Q  426 ttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttataaaagaccttctcccccaaagatc 525  Q
    |||||| || ||||||||||  ||||||||   ||||||||||||||||||||||||| |||||||| || ||||| ||| | ||||| || || || ||    
T  17708006 ttgatactgatttgaaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacacaggtc 17708105  T
Q  526 agttgatagctaaacccgcctcat 549  Q
    |||||| |||| |||| |||||||    
T  17708106 agttgacagcttaaccagcctcat 17708129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 501
Target Start/End: Original strand, 17717830 - 17717905
Alignment:
Q  426 ttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttat 501  Q
    |||||| || ||||||||||  ||||||||  |||||||||||| ||||||||||||| |||||||| || |||||    
T  17717830 ttgatactgatttgaaggctgatgaagtgagaaaagaagtgaatgtatgggctgaaaaggagacaaaagggcttat 17717905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 556
Target Start/End: Original strand, 16721883 - 16722013
Alignment:
Q  426 ttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttataaaagaccttctcccccaaagatc 525  Q
    |||||| |||||||||||||| ||||||     ||||||||||||| ||||||||||| |||||||| || ||||| ||| | ||||| || |   | ||    
T  16721883 ttgatactgttttgaaggctaatgaagttggagaagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctc 16721982  T
Q  526 agttgatagctaaacccgcctcatctctgct 556  Q
    |||| | |||| |||||||||||||| ||||    
T  16721983 agttaacagcttaacccgcctcatctttgct 16722013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 556
Target Start/End: Original strand, 17698897 - 17699027
Alignment:
Q  426 ttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttataaaagaccttctcccccaaagatc 525  Q
    |||||| |||||||||||||| ||||||     ||||||||||||| ||||||||||| |||||||| || ||||| ||| | ||||| || |   | ||    
T  17698897 ttgatactgttttgaaggctaatgaagttggagaagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacctggctc 17698996  T
Q  526 agttgatagctaaacccgcctcatctctgct 556  Q
    |||| | |||| |||||||||||||| ||||    
T  17698997 agttaacagcttaacccgcctcatctttgct 17699027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 495
Target Start/End: Original strand, 17735660 - 17735729
Alignment:
Q  426 ttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaaggg 495  Q
    |||||| || |||| |||||  ||||||||  ||||||||||||||||||||| | || |||||||||||    
T  17735660 ttgatactggtttgcaggctgatgaagtgataaaagaagtgaatttatgggctaataaggagacaaaggg 17735729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 434 - 534
Target Start/End: Original strand, 20358870 - 20358970
Alignment:
Q  434 gttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttataaaagaccttctcccccaaagatcagttgata 533  Q
    |||||||||| | |||||||||| ||| |||||||||||||| ||||||| |||||||  |||||||| ||||| ||||| || | | || |||||||||    
T  20358870 gttttgaaggttgttgaagtgacaaaaaaagtgaatttatggtctgaaaaagagacaattggccttattaaagaacttcttcctcgaggaccagttgata 20358969  T
Q  534 g 534  Q
    |    
T  20358970 g 20358970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 513
Target Start/End: Complemental strand, 20169448 - 20169337
Alignment:
Q  402 tatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaacgagacaaagggccttat 501  Q
    ||||||||||  ||||| ||  ||||||| | |||||||||| | |||||||||| ||| |||||||||||||| | ||||| |||||||  ||||||||    
T  20169448 tatttgcatagctgattattgtatttgatgtggttttgaaggttgttgaagtgacaaaaaaagtgaatttatggtcggaaaaagagacaattggccttat 20169349  T
Q  502 aaaagaccttct 513  Q
     ||||| |||||    
T  20169348 taaagaacttct 20169337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 3781215 - 3781250
Alignment:
Q  17 aagaatatgtcttggaggaaccaagcagtctgtcaa 52  Q
    |||||||||||||||||||||||| |||||||||||    
T  3781215 aagaatatgtcttggaggaaccaaacagtctgtcaa 3781250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University