View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_90 (Length: 237)
Name: NF9879_high_90
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_90 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 5592346 - 5592538
Alignment:
| Q |
12 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtc |
111 |
Q |
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| T |
5592346 |
agcagagaacttattattgaaatgatccactaaagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtc |
5592445 |
T |
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| Q |
112 |
tcatgagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttac |
204 |
Q |
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| T |
5592446 |
tcatgagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttac |
5592538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 5586077 - 5586267
Alignment:
| Q |
12 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
5586077 |
agcagagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcgatgtcattttgctcctcaacacaagacccatctgtc |
5586176 |
T |
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| Q |
112 |
tcatgagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgtt |
202 |
Q |
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| T |
5586177 |
ccatgagtaaagatggcacttggagtgcagcccaatagacctaacccagataacacatattttcttgctccaatttcatgtaaagcctgtt |
5586267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 5575607 - 5575795
Alignment:
| Q |
16 |
gagaacttattattgaaatgatccactagagatttaagcttgaaatcaaaaatggatgcaatgtcattttgctcctcaacacaagacccatatgtctcat |
115 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||| | |||||| ||| ||||| || ||||| | ||| ||| |
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| T |
5575607 |
gagaacttattattgaaatgatccactaaaaatttaagcttgaaattgaaaatcaatgcaggggcattttcctcatcaacgcaggacccgtttgttccat |
5575706 |
T |
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| Q |
116 |
gagtaaggatggcacttggagtgcagcccaataggcctaacccaggtaacacatattttcttgctccaatttcatgtaaagcctgttac |
204 |
Q |
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| T |
5575707 |
gagtaaagatggcacttggtgtgcagcccaaaaggcctaaccctactaacacatattttctagctccaatgtcatgtaaagtctgttac |
5575795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 5572667 - 5572712
Alignment:
| Q |
12 |
agcagagaacttattattgaaatgatccactagagatttaagcttg |
57 |
Q |
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| T |
5572667 |
agcagagaacttattattgaaatgttccactagagatttaagcttg |
5572712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 5580486 - 5580531
Alignment:
| Q |
12 |
agcagagaacttattattgaaatgatccactagagatttaagcttg |
57 |
Q |
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| T |
5580486 |
agcagagaacttattattgaaatgttccactagagatttaagcttg |
5580531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 5580576 - 5580614
Alignment:
| Q |
162 |
taacacatattttcttgctccaatttcatgtaaagcctg |
200 |
Q |
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| T |
5580576 |
taacacatattttcttgctccaatgtcatgtagagcctg |
5580614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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