View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_high_96 (Length: 222)

Name: NF9879_high_96
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_high_96
NF9879_high_96
[»] chr2 (5 HSPs)
chr2 (19-204)||(14275063-14275248)
chr2 (25-204)||(14296989-14297168)
chr2 (22-204)||(14313017-14313199)
chr2 (43-102)||(14307358-14307417)
chr2 (125-161)||(14307422-14307458)
[»] chr8 (1 HSPs)
chr8 (22-204)||(25880127-25880309)
[»] chr1 (1 HSPs)
chr1 (19-204)||(39661198-39661383)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 14275063 - 14275248
Alignment:
Q  19 atcctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatgatcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14275063 atcctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatgatcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgctt 14275162  T
Q  119 catccatgaatagtattttgctgcgttttagcatgatccttcccaagcacagaagttgcctttgccccacactccaattgtctcca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14275163 catccatgaatagtattttgctgcgttttagcatgatccttcccaagcacagaagttgcctttgccccacactccaattgtctcca 14275248  T

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Target: chr2; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 25 - 204
Target Start/End: Original strand, 14296989 - 14297168
Alignment:
Q  25 tgagcaatgctaatgattgtacgatctgcaaagttttctctgatgatcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgcttcatcca 124  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14296989 tgagcaatgctaatgattgtacgatccgcaaagtcttctctgatgatcttctgtaatacaacatcagtttgcgaatcaactgatgctgttgcttcatcca 14297088  T
Q  125 tgaatagtattttgctgcgttttagcatgatccttcccaagcacagaagttgcctttgccccacactccaattgtctcca 204  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14297089 tgaataatattttgctgcgttttagcatgatccttcccaagcatagaagttgcctttgccccacactccaattgtctcca 14297168  T

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Target: chr2; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 14313017 - 14313199
Alignment:
Q  22 ctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatgatcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgcttcat 121  Q
    ||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14313017 ctgtgagcaatgctaataattgtacgatctgcaaaatcctctctgatgatcttttgtattacagcatcagtttgcgaatcaactgatgctgttgcttcat 14313116  T
Q  122 ccatgaatagtattttgctgcgttttagcatgatccttcccaagcacagaagttgcctttgccccacactccaattgtctcca 204  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14313117 ccatgaataatattttgctgcgttttaacatgatccttcccaagcatagaagttgcctttgccccacactccaattgtctcca 14313199  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 14307358 - 14307417
Alignment:
Q  43 gtacgatctgcaaagttttctctgatgatcttttgtaatacagcatcagtttgcgaatca 102  Q
    ||||||||| |||| |  || |||||||||||||||| ||||||||||||||||||||||    
T  14307358 gtacgatctacaaaatcctccctgatgatcttttgtattacagcatcagtttgcgaatca 14307417  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 14307422 - 14307458
Alignment:
Q  125 tgaatagtattttgctgcgttttagcatgatccttcc 161  Q
    |||||| ||||||||||||||||||||||||||||||    
T  14307422 tgaataatattttgctgcgttttagcatgatccttcc 14307458  T

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Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 25880127 - 25880309
Alignment:
Q  22 ctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatgatcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgcttcat 121  Q
    ||||||||||||||||  |||||||||||||||||||  ||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||    
T  25880127 ctgtgagcaatgctaacaattgtacgatctgcaaagtcctctctgatgatcttttgtactacaacatcagtttgtgaatcaactgatgctgttgcttcat 25880226  T
Q  122 ccatgaatagtattttgctgcgttttagcatgatccttcccaagcacagaagttgcctttgccccacactccaattgtctcca 204  Q
    ||||||||| ||||||||| ||||||| |||||| ||||| ||||| |||||||| ||||| |||||||||||||| ||||||    
T  25880227 ccatgaataatattttgctacgttttaacatgattcttcctaagcatagaagttgtctttgtcccacactccaattatctcca 25880309  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 39661198 - 39661383
Alignment:
Q  19 atcctgtgagcaatgctaatgattgtacgatctgcaaagttttctctgatgatcttttgtaatacagcatcagtttgcgaatcaactgatgctgttgctt 118  Q
    ||||| |||||||| || ||||| |||||| | ||||||| ||||||||||||||| || | ||||||||| ||||| |||||||| || ||||| || |    
T  39661198 atcctatgagcaatactgatgatggtacgagccgcaaagtcttctctgatgatcttctgaattacagcatcggtttgagaatcaacagaagctgtagcct 39661297  T
Q  119 catccatgaatagtattttgctgcgttttagcatgatccttcccaagcacagaagttgcctttgccccacactccaattgtctcca 204  Q
    | ||||| ||||| | | ||||  | || ||||| | ||| || || ||||| |  ||||| |||||||||||||| || ||||||    
T  39661298 cgtccataaatagcagtctgctttgcttaagcataaccctccctaaacacagcaactgcctctgccccacactccagttatctcca 39661383  T

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