View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_97 (Length: 219)
Name: NF9879_high_97
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_97 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 4741950 - 4742121
Alignment:
| Q |
15 |
actatctatggtccatgggactggaaaactgaagtgcttccgaacaagttcagtgtctatatggaggaggctgcatgcaaatagctaccaaatcattctg |
114 |
Q |
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| T |
4741950 |
actatctatggtccatgggattggaaaactgaagtgcttccgaacaagttcatcgtctgtatggagg-----------------ctaccaaatcattctg |
4742032 |
T |
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| Q |
115 |
ttatcaataaatcacaaaaacctaaggaatcaaaatagtctttctctttttaatttattggcaaatcgcaatggtatacaatcacattt |
203 |
Q |
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| T |
4742033 |
ttatcaataaatcacaaaaacctaaggaatcaaaatagtctttctcttattaatttattggcaaatcgcaatggtatacaatcacattt |
4742121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 4721118 - 4721188
Alignment:
| Q |
11 |
tttcactatctatggtccatgggactggaaaactgaagtgcttccgaacaagttcagtgtctatatggagg |
81 |
Q |
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| T |
4721118 |
tttcactatgtatggtccatgggactggaaaactgaagtgcttccgaacaagttcatcgtctttatggagg |
4721188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 4721188 - 4721238
Alignment:
| Q |
98 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaa |
148 |
Q |
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| T |
4721188 |
gctaccaaatcattctgttatcaataaatcacaaaagcctaatgaaacaaa |
4721238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 4721403 - 4721453
Alignment:
| Q |
98 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaa |
148 |
Q |
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| T |
4721403 |
gctaccaaatcattctgttatcaataaatcacaaaagcctaatgaaacaaa |
4721453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 4721618 - 4721668
Alignment:
| Q |
98 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaa |
148 |
Q |
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| T |
4721618 |
gctaccaaatcattctgttatcaataaatcacaaaagcctaatgaaacaaa |
4721668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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