View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_high_98 (Length: 211)

Name: NF9879_high_98
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_high_98
NF9879_high_98
[»] chr1 (4 HSPs)
chr1 (1-197)||(48146174-48146370)
chr1 (119-197)||(48151141-48151219)
chr1 (1-31)||(6933118-6933148)
chr1 (1-31)||(32555704-32555734)
[»] chr3 (4 HSPs)
chr3 (1-35)||(20874459-20874493)
chr3 (1-31)||(4534500-4534530)
chr3 (1-35)||(31526261-31526295)
chr3 (1-29)||(8933670-8933698)
[»] chr8 (2 HSPs)
chr8 (2-34)||(12291784-12291816)
chr8 (1-31)||(31167866-31167896)
[»] chr5 (3 HSPs)
chr5 (1-33)||(14257344-14257376)
chr5 (1-31)||(30845202-30845232)
chr5 (1-29)||(36638644-36638672)
[»] chr7 (8 HSPs)
chr7 (1-31)||(22759065-22759095)
chr7 (1-31)||(27708935-27708965)
chr7 (1-31)||(31691271-31691301)
chr7 (1-35)||(39630257-39630291)
chr7 (2-31)||(25507247-25507276)
chr7 (1-30)||(28702639-28702668)
chr7 (5-34)||(39083555-39083584)
chr7 (5-33)||(22551526-22551554)
[»] chr2 (2 HSPs)
chr2 (1-31)||(6772696-6772726)
chr2 (1-30)||(10285758-10285787)
[»] chr4 (3 HSPs)
chr4 (3-32)||(52645571-52645600)
chr4 (1-29)||(7730513-7730541)
chr4 (1-29)||(41162212-41162240)
[»] chr6 (1 HSPs)
chr6 (1-29)||(2023788-2023816)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 48146174 - 48146370
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaacaaaatttaatatagtgacaacaatggaatgtattataattcatcatgattttattgcagaaatgtcattc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48146174 taagtgcttaattaagttgtttatccaaacaaaatttaatatggtgacaacaatggaatgtattataattcatcatgattctattgcagaaatgtcattc 48146273  T
Q  101 aagaggactcactcttgcataaatgctctgtgcatcagtggcaggactacttgctgctcttgattttctgcccaacttaggtgcctcatgttctttt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48146274 aagaggactcactcttgcataaatgctctgtgcatcagtggcaggactacttgcggctcttgattttctgcccaacttaggtgcctcatgttctttt 48146370  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 48151141 - 48151219
Alignment:
Q  119 ataaatgctctgtgcatcagtggcaggactacttgctgctcttgattttctgcccaacttaggtgcctcatgttctttt 197  Q
    |||||||||||||||||| |||||||||| |||| ||||  |||||||||| |  ||||||||||| ||||||||||||    
T  48151141 ataaatgctctgtgcatcggtggcaggaccacttcctgcctttgattttctacataacttaggtgcttcatgttctttt 48151219  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 6933118 - 6933148
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  6933118 taagtgcttaattaagttgtttatccaaaca 6933148  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32555734 - 32555704
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  32555734 taagtgcttaattaagttgtttatccaaaca 32555704  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20874459 - 20874493
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaacaaaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  20874459 taagtgcttaattaagttgtttatccaaacaaaat 20874493  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 4534500 - 4534530
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  4534500 taagtgcttaattaagttgtttatccaaaca 4534530  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 31526295 - 31526261
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaacaaaat 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  31526295 taagtgcttaattaagttgtttacccaaacaaaat 31526261  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8933698 - 8933670
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaa 29  Q
    |||||||||||||||||||||||||||||    
T  8933698 taagtgcttaattaagttgtttatccaaa 8933670  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 12291784 - 12291816
Alignment:
Q  2 aagtgcttaattaagttgtttatccaaacaaaa 34  Q
    |||||||||||||||||||||||||||||||||    
T  12291784 aagtgcttaattaagttgtttatccaaacaaaa 12291816  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 31167896 - 31167866
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  31167896 taagtgcttaattaagttgtttatccaaaca 31167866  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14257376 - 14257344
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaacaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  14257376 taagtgcttaattaagttgtttatccaaacaaa 14257344  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 30845232 - 30845202
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  30845232 taagtgcttaattaagttgtttatccaaaca 30845202  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36638672 - 36638644
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaa 29  Q
    |||||||||||||||||||||||||||||    
T  36638672 taagtgcttaattaagttgtttatccaaa 36638644  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 22759095 - 22759065
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  22759095 taagtgcttaattaagttgtttatccaaaca 22759065  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 27708935 - 27708965
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  27708935 taagtgcttaattaagttgtttatccaaaca 27708965  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31691271 - 31691301
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  31691271 taagtgcttaattaagttgtttatccaaaca 31691301  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 39630291 - 39630257
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaacaaaat 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  39630291 taagtgcttaattaagttgtttatccaatcaaaat 39630257  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 25507276 - 25507247
Alignment:
Q  2 aagtgcttaattaagttgtttatccaaaca 31  Q
    ||||||||||||||||||||||||||||||    
T  25507276 aagtgcttaattaagttgtttatccaaaca 25507247  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 28702668 - 28702639
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaac 30  Q
    ||||||||||||||||||||||||||||||    
T  28702668 taagtgcttaattaagttgtttatccaaac 28702639  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 39083584 - 39083555
Alignment:
Q  5 tgcttaattaagttgtttatccaaacaaaa 34  Q
    ||||||||||||||||||||||||||||||    
T  39083584 tgcttaattaagttgtttatccaaacaaaa 39083555  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 22551526 - 22551554
Alignment:
Q  5 tgcttaattaagttgtttatccaaacaaa 33  Q
    |||||||||||||||||||||||||||||    
T  22551526 tgcttaattaagttgtttatccaaacaaa 22551554  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 6772696 - 6772726
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  6772696 taagtgcttaattaagttgtttatccaaaca 6772726  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10285787 - 10285758
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaac 30  Q
    ||||||||||||||||||||||||||||||    
T  10285787 taagtgcttaattaagttgtttatccaaac 10285758  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 52645600 - 52645571
Alignment:
Q  3 agtgcttaattaagttgtttatccaaacaa 32  Q
    ||||||||||||||||||||||||||||||    
T  52645600 agtgcttaattaagttgtttatccaaacaa 52645571  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7730541 - 7730513
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaa 29  Q
    |||||||||||||||||||||||||||||    
T  7730541 taagtgcttaattaagttgtttatccaaa 7730513  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41162212 - 41162240
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaa 29  Q
    |||||||||||||||||||||||||||||    
T  41162212 taagtgcttaattaagttgtttatccaaa 41162240  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2023788 - 2023816
Alignment:
Q  1 taagtgcttaattaagttgtttatccaaa 29  Q
    |||||||||||||||||||||||||||||    
T  2023788 taagtgcttaattaagttgtttatccaaa 2023816  T

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