View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_1 (Length: 1276)
Name: NF9879_low_1
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 565 - 1265
Target Start/End: Original strand, 25412918 - 25413637
Alignment:
| Q |
565 |
tcctcacaactatatatgcaggtgatcatgtatctaattcattcgcacaaattgaagtgagtaatgaaatggtatttgaaaagaaaaaagacaacaaggt |
664 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
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| T |
25412918 |
tccttacaactatatatgcaggtgatcatgtatctaattcattcgcacaaattgaagtgagaaaagaaatggtatttgacaagaaaaaagacaacaaggt |
25413017 |
T |
|
| Q |
665 |
catcaagaatttgtcacctccaagcgaaaaatgcaacaaaaagttagatctaataaacaaggcaaaagaaggggttgataccaatggtgattcaattagg |
764 |
Q |
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| T |
25413018 |
catcaagaatttgtcaccttcaagcgaaaaatgcaacaaaaaggtagatctaataaacatgggaaaagaaggggttgataacaatggtgattcaattagg |
25413117 |
T |
|
| Q |
765 |
acagtactttcagatcaagaatatattgtgtttagctttagagaggatggatcatttgatgtagccacggacagtattgctgccaaatctgagtcttcaa |
864 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25413118 |
acagtactttccgatcaagaatatattgtgtttagctttagagaggatggatcatttgatgtagacacggacagtattgctgccaaatctgagtcttcaa |
25413217 |
T |
|
| Q |
865 |
gtgtcgatggaaagcgtgaaaactcaaaggcagtgagtcgaaaggtacatattatacactcattgccattaacaaaattctcaatttttcatataaatta |
964 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25413218 |
gtgttgatggaaagcgtgaaaactcaaaggcggtgagtcgaaaggtacatattacacactcattgccattaacaaaattctcaatttttcatataaatta |
25413317 |
T |
|
| Q |
965 |
tacccctatgtcttggctagatatcatacatactatagatgtaatcatattatgtcataggtttttaatcgattgcgagtatttatattgctgcca---- |
1060 |
Q |
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| T |
25413318 |
tacccctatgacttggctagatatcatacatactatagatgtaatcatattatgtcataggtttttaatcgattgcgagtatttatattgctgccaaatg |
25413417 |
T |
|
| Q |
1061 |
---agaaagcattgtcaa------------tgcggttgttatgtcgttgtagataccttaaaatcttttatgttgatgccataatttgtgattgtcgttt |
1145 |
Q |
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| T |
25413418 |
cggagaaagcatggtcaatgcggtcaaaattgcggttgttatgtcgttgtagatacattaaaaaaatttatgttgatgccataacttgtggttgtcgttt |
25413517 |
T |
|
| Q |
1146 |
gcaatttgaaactacgaatatagtttagcgacatcgtttgcaattacagttaaacgccaccgatgagacctaaattgtcgttgccttgcaatctgtagag |
1245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25413518 |
gcaatttgaaactacgaatatagtttagcgacatcgtttgcaattacagttaaacgccaccgatgagacctaaattgtggttgccttgcaatctgtagag |
25413617 |
T |
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| Q |
1246 |
acataaaaaactttgatgtc |
1265 |
Q |
| |
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| T |
25413618 |
acataaaaaacattgatgtc |
25413637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 25412361 - 25412783
Alignment:
| Q |
19 |
tcccgagtgtgactcgattcattgtaatcccttcctcttccttcattcacattgaaaataaaatgaatgtttaatcaaaattctagaatacaattattga |
118 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25412361 |
tcccgagtgtgactcgattcattgtaatccctccatcttccttcattcacattgaaaataaaatgaatgtttaatcaaaattctagaatacaattatgga |
25412460 |
T |
|
| Q |
119 |
ctgctgtcaaattaaatctccactaattagtcacnnnnnnntccccactaatttctacattctcttaatagaatcacaattgacaaggtactcattaaag |
218 |
Q |
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| T |
25412461 |
ctgctgtcaaattaaatctccactaattagtcacaaaaaaatccccactaatttctacattctcttaatagaatcacaattgacaaggtactcattaaag |
25412560 |
T |
|
| Q |
219 |
tttgacaccgtaaattcatttaccttaaatgcactttcaaattcaaatcctaaattccctctagtacatgatcttgtctctaacacaatatttctcaact |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25412561 |
tttgacaccgtaaattcatttaccttaaatgcactttcaaattcaaatcctaaattccctctagtacatgatcttgtctctaacacaatatttctcaact |
25412660 |
T |
|
| Q |
319 |
actaaaaaattcttttcccaagaaataaacaaaatataaaaccatcatgatcacaccatcgacaataatgaaatggagagcttcatgtttttcgccattc |
418 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25412661 |
actaaaaaattattttcccaaaaaataaacaaaatataaaaccatcatgatcacaccatcgacaataatgaaatggagagcttcatgtttttcgccattc |
25412760 |
T |
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| Q |
419 |
aagttgcctttaggtataaactg |
441 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
25412761 |
aagttgcctttaggtataaactg |
25412783 |
T |
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