View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_10 (Length: 559)
Name: NF9879_low_10
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_10 |
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| [»] scaffold0054 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 24415490 - 24415238
Alignment:
| Q |
17 |
agaaatcacacgctagtaccaaatttgtctatgaggattagattatattcgtcataagaagaacagtagaggtgagaatcgataatagattggtaaacca |
116 |
Q |
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| T |
24415490 |
agaaatcgcgcgctagtaccaaatttgtctatgaggattagattatattcttcataagaagaacaatagaggtgagaatcgataatagattggtaaacca |
24415391 |
T |
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| Q |
117 |
tgatatctaaaagcaaaatagtaaattggaaacaaaccaaaactaaaactgtcactttcttattatgagccttttttcatcttccaaggtagtattatta |
216 |
Q |
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| T |
24415390 |
tgatatgtaaaagcaaaatagtaaattggaaacaaaccaaaactaaaactgtcactttcttattatgacccttttttcatcttccaaggtagtattatta |
24415291 |
T |
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| Q |
217 |
tacttatttatttttgatgcatttcccgttttcattttggtactagcctatga |
269 |
Q |
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| T |
24415290 |
tacttatttatttttgatgcatttcccgttatcattttggtactagcctatga |
24415238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 32958282 - 32958346
Alignment:
| Q |
17 |
agaaatcacacgctagtaccaaatttgtctatgaggattagattatattcgtcataagaagaaca |
81 |
Q |
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| T |
32958282 |
agaaatcacacgttagtaccaaatttgtcaatggggcttagattatcttcgtcgtaagaagaaca |
32958346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 42921 - 42830
Alignment:
| Q |
17 |
agaaatcacacgctagtaccaaatttgtctatgaggattagattatattcgtcataagaagaacagtagaggtgagaatcgataatagattg |
108 |
Q |
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| T |
42921 |
agaaatcacacgctaataccaaatttgtctatgtggattagattatattcgtcataagaagaaaagtagcagtgagaattgataatagattg |
42830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 42546 - 42480
Alignment:
| Q |
201 |
caaggtagtattattatacttatttatttttgatgcatttcccgttttcattttggtactagcctatg |
268 |
Q |
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| T |
42546 |
caaggtagtagtattatacttatttattttt-atgcatttcccgttttcattttggtactagcctatg |
42480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 38206 - 38163
Alignment:
| Q |
136 |
agtaaattggaaacaaaccaaaactaaaactgtcactttcttat |
179 |
Q |
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| T |
38206 |
agtaaattggaaacaaacacaaattaaaactgtcactttcttat |
38163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 274 - 372
Target Start/End: Complemental strand, 36086048 - 36085951
Alignment:
| Q |
274 |
attcaactgaatttgatgatgaatttctgatttgtgagtttcatgatcctaattg-tgagttttttctaatttatgagttttaggttttagattcttatg |
372 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
36086048 |
attcaactgaatttgatgatgagtttctgatttg--agtttcacgatcctaatttatgagtttaatctagtttatgagttttaggttttagattcttatg |
36085951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 1335093 - 1335061
Alignment:
| Q |
337 |
ttctaatttatgagttttaggttttagattctt |
369 |
Q |
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| T |
1335093 |
ttctaatttatgagttttaggttttagattctt |
1335061 |
T |
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