View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_100 (Length: 247)
Name: NF9879_low_100
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_100 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 5942635 - 5942498
Alignment:
| Q |
110 |
caaagcatgtatgacctatccctaatttatcttttatcacttcaaattattatttagaagaaacctttcatttacgaacaattgctagagtggagtgatg |
209 |
Q |
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| T |
5942635 |
caaagcatgtatgacctatccctaatttatcttttatcacttcaaattattatttagaagaaacctttcatttacggaaaattgctagagtggagtgatg |
5942536 |
T |
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| Q |
210 |
taattgtaacatgtggtttacgatagaccgatagttaa |
247 |
Q |
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| T |
5942535 |
taattgtaacatgtggtttacgatagaccgataattaa |
5942498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 5942877 - 5942767
Alignment:
| Q |
1 |
cttcaataagttcatttgtaa-----aagaaaatattatacaccttttgcttgtgtccctctaagtgtctgtttggatgggcggctgtaaatcacgtttt |
95 |
Q |
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| T |
5942877 |
cttcaataagttcatttgtaatttgaaaaagaatattatacaccttttgcttgtgtcccactaagtgtctgtttggatgggcggctgcaaatcacgtttt |
5942778 |
T |
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| Q |
96 |
gcttaaaatta |
106 |
Q |
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| T |
5942777 |
gcttaaaatta |
5942767 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 31363167 - 31363221
Alignment:
| Q |
59 |
agtgtctgtttggatgggcggctgtaaatcacgttttgcttaaaattacggcaaa |
113 |
Q |
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| T |
31363167 |
agtgtctgattggatgggcggctgtaaattacgttttgcttaaaattacggcaaa |
31363221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 8778914 - 8778968
Alignment:
| Q |
59 |
agtgtctgtttggatgggcggctgtaaatcacgttttgcttaaaattacggcaaa |
113 |
Q |
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| T |
8778914 |
agtgtatgtttggatgggcggttgcaaatcacgttttgcttaaaatcatggcaaa |
8778968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 16930274 - 16930216
Alignment:
| Q |
55 |
tctaagtgtctgtttggatgggcggctgtaaatcacgttttgcttaaaattacggcaaa |
113 |
Q |
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| T |
16930274 |
tctaagtgcctgtttggatgggcggctgcaagtcacgttttgctagaaatcacggcaaa |
16930216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 43684525 - 43684573
Alignment:
| Q |
58 |
aagtgtctgtttggatgggcggctgtaaatcacgttttgcttaaaatta |
106 |
Q |
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| T |
43684525 |
aagtgtctctttggatgggcgactgcaaatcaagttttgcttaaaatta |
43684573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 28739582 - 28739626
Alignment:
| Q |
65 |
tgtttggatgggcggctgtaaatcacgttttgcttaaaattacgg |
109 |
Q |
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| T |
28739582 |
tgtttgaatgggcggctgcaaatcacgttttgcttgaaatcacgg |
28739626 |
T |
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