View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_102 (Length: 243)
Name: NF9879_low_102
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_102 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 37446922 - 37446724
Alignment:
| Q |
45 |
tgtataagtgtgccactataaatataaagtatctgctatgtcaatgttacaatatttgtggtgtagttttaatattcacttctaacaaacatttcggatc |
144 |
Q |
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| T |
37446922 |
tgtataagtgtgccactataaatataaagtatctgctatgtcaatgttacaatatttgtggtgcagttttaatattcacttctaacaaacatttcggatc |
37446823 |
T |
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| Q |
145 |
accaatagaactttcctccaaatgaccaatcnnnnnnncctctcctcctcccattttgaactatcaccacaaaaagaggaataaaatagataggaagaa |
243 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37446822 |
accaatagaactttcctccaaatgaccaatctttttttcctctcctcctcccattttgaactagcaccacaaaaagaggaataaaatagataggaagaa |
37446724 |
T |
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