View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_104 (Length: 242)
Name: NF9879_low_104
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_104 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 22082152 - 22082374
Alignment:
| Q |
20 |
ggtggggcagagctcagagtggtatgacgatgcctttgtactacaatgtgtttttcttctttgtttgatttttgttccaatgttgaaaataaacaaattt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22082152 |
ggtggggcagagctcagagtggtatgacgatgcctttgtactatagtgtgtttttcttctttgtttgatttttgttccaatgttgaaaataaacaaattt |
22082251 |
T |
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| Q |
120 |
gctggtagtttgaagtttatattggttgaaaattgaaacgaaatgtgttgactcatttggtaagagagactttgaattgtttattttcttatatttatgc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |
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| T |
22082252 |
gctggtagtttgaagtttatattggttgaaaattgaaacaaaatgtgttgactcatttggtgggagagactttgaatagtttgatttcttatatttatgc |
22082351 |
T |
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| Q |
220 |
ttaccatctcaatttgaagatcc |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
22082352 |
ttaccatctcaatttgaagatcc |
22082374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 37617820 - 37617598
Alignment:
| Q |
20 |
ggtggggcagagctcagagtggtatgacgatgcctttgtactacaatgtgtttttcttctttgtttgatttttgttccaatgttgaaaataaacaaattt |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37617820 |
ggtggggcagagctcacagtggtatgacgatgcctttgtactatagtgtgtttttcttctttgtttgatttttgttccaatgttgaaaataaacaaattt |
37617721 |
T |
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| Q |
120 |
gctggtagtttgaagtttatattggttgaaaattgaaacgaaatgtgttgactcatttggtaagagagactttgaattgtttattttcttatatttatgc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| |||| |||||||||||||||| |
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| T |
37617720 |
gctggtagtttgaagtttatattggttgaaaattgaaacaaaatgtgttgactcatttgatgggagagactttgaatagtttgatttcttatatttatgc |
37617621 |
T |
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| Q |
220 |
ttaccatctcaatttgaagatcc |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
37617620 |
ttaccatctcaatttgaagatcc |
37617598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 19767129 - 19767351
Alignment:
| Q |
20 |
ggtggggcagagctcagagtggtatgacgatgcctttgtactacaatgtgtttttcttctttgtttgatttttgttccaatgttgaaaataaacaaattt |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19767129 |
ggtggggcagagctcacagtggtatgacgatgcctttgtactatagtgtgtttttcttctttgtttgatttttgttccaatgttgaaaataaacaaattt |
19767228 |
T |
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| Q |
120 |
gctggtagtttgaagtttatattggttgaaaattgaaacgaaatgtgttgactcatttggtaagagagactttgaattgtttattttcttatatttatgc |
219 |
Q |
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|||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |
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| T |
19767229 |
cctggtagtttgaagtttacattggttgaaaatttaaacaaaatgtgttgactcatttggtgggagagactttgaatagtttgatttcttatatttatgc |
19767328 |
T |
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| Q |
220 |
ttaccatctcaatttgaagatcc |
242 |
Q |
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||||||||||||||||||||||| |
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| T |
19767329 |
ttaccatctcaatttgaagatcc |
19767351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 40164262 - 40164492
Alignment:
| Q |
20 |
ggtggggcagagctcagagtggtatgacgatgcctttgtactacaatgtgtttttcttctttgtttgatttttgttccaatgttgaaaataaacaaattt |
119 |
Q |
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|||||||||||||||| |||||||||||| || |||||||||| ||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
40164262 |
ggtggggcagagctcacagtggtatgacggtgtctttgtactataatatgtttgtcttctttgtttaatttttgttccaacgttgaaaataaacaaattt |
40164361 |
T |
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| Q |
120 |
--gctgg------tagtttgaagtttatattggttgaaaattgaaacgaaatgtgttgactcatttggtaagagagactttgaattgtttattttcttat |
211 |
Q |
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| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |||| |||| |
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| T |
40164362 |
ctggtggatattttagtttgaagtttatattggttgaaaattgaaacgaaatgtgttgacttatttggtgggagagactttgaatagtttgtttttttat |
40164461 |
T |
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| Q |
212 |
atttatgcttaccatctcaatttgaagatcc |
242 |
Q |
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|| |||||||||| ||||||||||||||||| |
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| T |
40164462 |
atatatgcttaccgtctcaatttgaagatcc |
40164492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 7828005 - 7827905
Alignment:
| Q |
20 |
ggtggggcagagctcagagtggtatgacgatgcctttgtactacaatgtgtttttcttctt-tgtttgatttttgttccaatgttgaaaataaacaaatt |
118 |
Q |
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|||||| ||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
7828005 |
ggtgggacagagctcatagtggtatgacaatgtctttgtactataatgtgtttttcttcttctgtttgatttatgttccaatgttgaaaataaacaaatt |
7827906 |
T |
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| Q |
119 |
t |
119 |
Q |
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| T |
7827905 |
t |
7827905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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