View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_105 (Length: 242)
Name: NF9879_low_105
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 10434894 - 10435136
Alignment:
| Q |
1 |
ccgacatcataacacatctaaattgagtagtattcgtggttaataactagtaactagttagttaatgaactaaaaacccatggaaagaaatcaaaccagg |
100 |
Q |
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||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10434894 |
ccgacatcataacacatctaaattgaggagtatccatgcttaataactagtaactagttagttaatgaactaaaaacccattgaaagaaatcaaaccagg |
10434993 |
T |
|
| Q |
101 |
ctctagtaccacttgtcggaggaatatgcaagaaaatgttgaaatgaataagggt-------gagttgagagattataagtgattggaatgt---nnnnn |
190 |
Q |
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||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10434994 |
ctctattaccacttgtcggactaatatgcaagaaaatgtcgaaatgaataagggtgaatatagagttgagagattataagtgattggaatgtaaaaaaat |
10435093 |
T |
|
| Q |
191 |
nnnnntatattcatggtaaccaagtagttactttatgatgtcc |
233 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
10435094 |
atatatatattcatggtaaccaagtagttactttatgaggtcc |
10435136 |
T |
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