View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_106 (Length: 241)
Name: NF9879_low_106
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_106 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 25379012 - 25378788
Alignment:
| Q |
1 |
cttatatctgaatcttatgatgatgaacttctcttcatgcaacaacttttcaaggtgaataataatgctgaacctgttaacccctactccaagaaaccct |
100 |
Q |
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| T |
25379012 |
cttatatctgaatcttatgatgatgaacttctcttcatgcagcaacttttcaaggtgaataataatgctgaacctgttaacccctactccaagaaaccct |
25378913 |
T |
|
| Q |
101 |
cttcaaactcttatccattggattattcttcccaaactaacagtaatcagattctccctgatgttactgattgtggatttgttcattccaatccttccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25378912 |
cttcaaactcttatccattggattattcttcccaaactaacagtaatcagattctccctgatgttactgattgtggatttgttcattccaatccttccaa |
25378813 |
T |
|
| Q |
201 |
ttaccctaagccaaattcacaaaac |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
25378812 |
ttaccctaagccaaattcacaaaac |
25378788 |
T |
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