View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_108 (Length: 241)

Name: NF9879_low_108
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_108
NF9879_low_108
[»] chr4 (4 HSPs)
chr4 (1-220)||(42308859-42309078)
chr4 (71-133)||(51252696-51252758)
chr4 (71-126)||(54470199-54470254)
chr4 (44-76)||(50381855-50381887)
[»] chr8 (2 HSPs)
chr8 (71-126)||(42493541-42493596)
chr8 (81-134)||(25985503-25985556)
[»] chr7 (5 HSPs)
chr7 (71-125)||(41948509-41948563)
chr7 (71-123)||(38920789-38920841)
chr7 (71-134)||(36514442-36514505)
chr7 (71-126)||(40169641-40169696)
chr7 (71-126)||(42187462-42187517)
[»] chr3 (3 HSPs)
chr3 (71-133)||(36820196-36820258)
chr3 (71-123)||(42510249-42510301)
chr3 (83-132)||(31142619-31142668)
[»] chr2 (5 HSPs)
chr2 (73-148)||(23714498-23714573)
chr2 (73-148)||(24102170-24102245)
chr2 (71-124)||(6218961-6219014)
chr2 (76-148)||(19337090-19337163)
chr2 (181-218)||(19855416-19855453)
[»] chr1 (3 HSPs)
chr1 (71-126)||(43423711-43423766)
chr1 (72-126)||(51812517-51812571)
chr1 (78-126)||(1661422-1661470)
[»] chr5 (2 HSPs)
chr5 (79-148)||(34194741-34194811)
chr5 (71-127)||(12577083-12577138)
[»] scaffold0018 (1 HSPs)
scaffold0018 (71-127)||(44103-44159)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 42308859 - 42309078
Alignment:
Q  1 catggaagatatttctcacactcttacctacttctagaaatggcaacttctcttataaaccaaacacaccccacataagcctagtttccacaatcttttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42308859 catggaagatatttctcacactcttacctacttctagaaatgacaacttctcttataaaccaaacacaccccacataagcctagtttccacaatcttttc 42308958  T
Q  101 tattataagtgctatcccaactctctataatgtttcatttttaatcctttcaaacaaaacatctttagcttttctaagcctaatttattttcgtgttggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42308959 tattataagtgctatcccaactctctataatgtttcatttttaatcctttcaaacaaaacatctttagcttttctaagcctaatttattttcgtgttggt 42309058  T
Q  201 tcttgagatcccaacactct 220  Q
    ||||||||||||||||||||    
T  42309059 tcttgagatcccaacactct 42309078  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 51252696 - 51252758
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctctataatgt 133  Q
    |||| |||||||||||||||| |||||||||| || | |||||| ||||||||||| ||||||    
T  51252696 ccacctaagcctagtttccaccatcttttctactagaggtgctaccccaactctctctaatgt 51252758  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 54470254 - 54470199
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctct 126  Q
    |||| |||| ||||||||||| |||||||||| |||| |||||| |||||||||||    
T  54470254 ccacttaagtctagtttccaccatcttttctactataggtgctaccccaactctct 54470199  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 50381887 - 50381855
Alignment:
Q  44 caacttctcttataaaccaaacacaccccacat 76  Q
    |||||||||||||||||||||||||||| ||||    
T  50381887 caacttctcttataaaccaaacacaccctacat 50381855  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 42493541 - 42493596
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctct 126  Q
    |||| ||||||||||||||||||||||||||| |||| ||| || |||||||||||    
T  42493541 ccacctaagcctagtttccacaatcttttctactataggtgttaccccaactctct 42493596  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 25985556 - 25985503
Alignment:
Q  81 ctagtttccacaatcttttctattataagtgctatcccaactctctataatgtt 134  Q
    |||||||| || |||||||||| |||| |||||| ||||||||||| |||||||    
T  25985556 ctagtttctaccatcttttctactataggtgctaccccaactctctctaatgtt 25985503  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 41948563 - 41948509
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctc 125  Q
    |||| |||||||||||||||| |||||||||||| |||||||||  |||||||||    
T  41948563 ccacttaagcctagtttccaccatcttttctattgtaagtgctacgccaactctc 41948509  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 38920841 - 38920789
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactc 123  Q
    |||| |||||||||||||||| |||||||||| |||| |||||| ||||||||    
T  38920841 ccacttaagcctagtttccaccatcttttctactataggtgctaccccaactc 38920789  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 36514442 - 36514505
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctctataatgtt 134  Q
    |||| |||| |||||||| || |||||||||| |||| |||||| ||||||||||| |||||||    
T  36514442 ccacctaagtctagtttctaccatcttttctactataggtgctaccccaactctctctaatgtt 36514505  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 40169696 - 40169641
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctct 126  Q
    |||| |||||||| ||||||| |||||||||| ||||||||||| ||||| |||||    
T  40169696 ccacctaagcctattttccaccatcttttctactataagtgctaccccaattctct 40169641  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 42187517 - 42187462
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctct 126  Q
    |||| |||||||| ||||||| ||||||||||||||| |||||| ||| |||||||    
T  42187517 ccacctaagcctattttccaccatcttttctattataggtgctaccccgactctct 42187462  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 36820196 - 36820258
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctctataatgt 133  Q
    |||| |||||||||||||||| |||||| ||| |||| |||||| ||||||||||| ||||||    
T  36820196 ccacctaagcctagtttccaccatctttgctaatataggtgctaccccaactctctctaatgt 36820258  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 42510249 - 42510301
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactc 123  Q
    |||| |||||||| ||||||| |||||||||| |||| |||||||||||||||    
T  42510249 ccacctaagcctattttccactatcttttctactataggtgctatcccaactc 42510301  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 31142619 - 31142668
Alignment:
Q  83 agtttccacaatcttttctattataagtgctatcccaactctctataatg 132  Q
    |||||||||||| || ||||||||||||||||   |||||||||||||||    
T  31142619 agtttccacaattttatctattataagtgctacttcaactctctataatg 31142668  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 23714498 - 23714573
Alignment:
Q  73 acataagcctagtttccacaatcttttctattataagtgctatcccaactctctataatgt-ttcatttttaatcct 148  Q
    ||||||| ||||||||||| |||||||||| |||| |||||| ||||||||| | ||||||  ||||||||||||||    
T  23714498 acataagtctagtttccaccatcttttctactatatgtgcta-cccaactctatctaatgtcgtcatttttaatcct 23714573  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 24102170 - 24102245
Alignment:
Q  73 acataagcctagtttccacaatcttttctattataagtgctatcccaactctctataatgt-ttcatttttaatcct 148  Q
    ||||||| ||||||||||| |||||||||| |||| |||||| ||||||||| | ||||||  ||||||||||||||    
T  24102170 acataagtctagtttccaccatcttttctactatatgtgcta-cccaactctatctaatgtcgtcatttttaatcct 24102245  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 6219014 - 6218961
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactct 124  Q
    |||| |||||||| | ||||| |||||||||| ||||||||||| |||||||||    
T  6219014 ccacctaagcctattatccactatcttttctactataagtgctaccccaactct 6218961  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 19337090 - 19337163
Alignment:
Q  76 taagcctagtttccacaatcttttctattataagtgctatcccaactctctataatgtt-tcatttttaatcct 148  Q
    ||||| || ||||||| |||||| ||| |||| |||||| ||||||||||| ||||||| |||||| |||||||    
T  19337090 taagcttattttccaccatctttactactataggtgctaccccaactctctctaatgttctcatttataatcct 19337163  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 19855453 - 19855416
Alignment:
Q  181 taatttattttcgtgttggttcttgagatcccaacact 218  Q
    |||||||||||||||||||||||||| | |||||||||    
T  19855453 taatttattttcgtgttggttcttgacagcccaacact 19855416  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 43423766 - 43423711
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctct 126  Q
    |||| |||||||||||||||| |||||||||| |||| ||| || |||||||||||    
T  43423766 ccacctaagcctagtttccaccatcttttctactataggtgttaccccaactctct 43423711  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 51812571 - 51812517
Alignment:
Q  72 cacataagcctagtttccacaatcttttctattataagtgctatcccaactctct 126  Q
    |||||||||||||||||||| |||||||||| ||||  || || |||||||||||    
T  51812571 cacataagcctagtttccaccatcttttctactatagttgttaccccaactctct 51812517  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 1661470 - 1661422
Alignment:
Q  78 agcctagtttccacaatcttttctattataagtgctatcccaactctct 126  Q
    |||||| ||||||| |||||||||| |||| |||||| |||||||||||    
T  1661470 agcctattttccaccatcttttctactataggtgctaccccaactctct 1661422  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 34194741 - 34194811
Alignment:
Q  79 gcctagtttccacaatcttttctattataagtgctatcccaactctctataatgttt-catttttaatcct 148  Q
    |||| |||||||| ||||||| | ||||| ||| |||||||||||||| |||||||| ||||| |||||||    
T  34194741 gcctggtttccaccatcttttatgttataggtgttatcccaactctctctaatgtttacatttctaatcct 34194811  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 12577083 - 12577138
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctcta 127  Q
    ||||||||| ||||||||||| |||||||||| || | |||||| ||||||||||||    
T  12577083 ccacataagtctagtttccaccatcttttctactacaggtgcta-cccaactctcta 12577138  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 44103 - 44159
Alignment:
Q  71 ccacataagcctagtttccacaatcttttctattataagtgctatcccaactctcta 127  Q
    |||| |||||||| ||||| | |||||||||| |||| |||||| ||||||||||||    
T  44103 ccacctaagcctattttccgccatcttttctactataggtgctaccccaactctcta 44159  T

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