View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_11 (Length: 547)

Name: NF9879_low_11
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_11
NF9879_low_11
[»] chr3 (6 HSPs)
chr3 (162-438)||(20844036-20844306)
chr3 (100-162)||(20843588-20843650)
chr3 (439-489)||(20844337-20844388)
chr3 (18-56)||(20843545-20843583)
chr3 (39-159)||(21212823-21212943)
chr3 (491-530)||(20844722-20844761)
[»] chr1 (1 HSPs)
chr1 (22-141)||(46655360-46655479)
[»] chr5 (1 HSPs)
chr5 (18-162)||(28750235-28750381)
[»] chr6 (3 HSPs)
chr6 (32-146)||(27371914-27372028)
chr6 (32-146)||(27462264-27462378)
chr6 (391-424)||(8467165-8467198)
[»] chr4 (1 HSPs)
chr4 (18-65)||(43577994-43578041)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 162 - 438
Target Start/End: Original strand, 20844036 - 20844306
Alignment:
Q  162 gaaaatgtaaagcaaagaaaagtttatacaaaatttcgtccaacacaatttatcacttccatatccaagtgacttatcacaagaggtgactcaggtaatg 261  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20844036 gaaaatgtaaagcaaagagaagtttatacaaaatttcgtccaacacaatttatcacttccatatccaagtgacttataacaagaggtgactcaggtaatg 20844135  T
Q  262 gttggctagcaaaggtagaggaacttcaaagtttcagttataacgctactaaattctttcaaagatcttgnnnnnnnnnnnnnccacaaccacctatcta 361  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |             |||||||||||||||||    
T  20844136 gttggctagcaaaggtgga-gaacttcaaagtttcagttataacgctactaaattctttcaaaaatctag-----ttttcattccacaaccacctatcta 20844229  T
Q  362 catgttgcatatagttaggagaatgaaaaattatgaatgtaacgtgcataaggttattttatctacgattcctacaa 438  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  20844230 catgttgcatatagttaggtgaatgaaaaattatgaatgtaacgtgcataaggttattttattcacgattcctacaa 20844306  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 20843588 - 20843650
Alignment:
Q  100 atttagtaaatatatctgccacttgctctttggaagaaactgatagtacgtgaagtatgcttg 162  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  20843588 atttagtcaatatatctgccacttgctctttggaagaaactggtagtaggtgatgtatgcttg 20843650  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 489
Target Start/End: Original strand, 20844337 - 20844388
Alignment:
Q  439 accacatgcataattgtcttgcttttctagagttggacaaaa-gtttggact 489  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  20844337 accacatgcataattgtcttgcttttctaaagttggacaaaaggtttggact 20844388  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 20843545 - 20843583
Alignment:
Q  18 ttatcatcctccctcaagctggaatgaatgtcaatcatg 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20843545 ttatcatcctccctcaagctggaatgaatgtcaatcatg 20843583  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 21212823 - 21212943
Alignment:
Q  39 gaatgaatgtcaatcatgccaagcttgtgccgtagagtgttgaaaggcccagggtgaagagatttagtaaatatatctgccacttgctctttggaagaaa 138  Q
    |||||||||| ||||||| ||||||||||  ||||| ||||||||||    |||| ||  |||||||| || |||| ||||||||| |||||||||||||    
T  21212823 gaatgaatgtgaatcatgtcaagcttgtgatgtagaatgttgaaaggtttggggtcaactgatttagtcaaaatatatgccacttgttctttggaagaaa 21212922  T
Q  139 ctgatagtacgtgaagtatgc 159  Q
     || ||| | |||||| ||||    
T  21212923 atggtagcaagtgaagcatgc 21212943  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 491 - 530
Target Start/End: Original strand, 20844722 - 20844761
Alignment:
Q  491 gtattgattacgactagaaaattgctcttctcccttttgt 530  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  20844722 gtattgattatgactagaaaattgctcttctcccttttgt 20844761  T

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Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 46655479 - 46655360
Alignment:
Q  22 catcctccctcaagctggaatgaatgtcaatcatgccaagcttgtgccgtagagtgttgaaaggcccagggtgaagagatttagtaaatatatctgccac 121  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||| |||||||| ||||||||||| ||||| ||||||||    
T  46655479 catcccccctcaagctggaatggatgtcaatcatgtcaagcttgtgctgtagaatgttgaaaggtccagggtggagagatttagtcaatatgtctgccac 46655380  T
Q  122 ttgctctttggaagaaactg 141  Q
    ||||||||| ||||||||||    
T  46655379 ttgctcttttgaagaaactg 46655360  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 28750381 - 28750235
Alignment:
Q  18 ttatcatcctccctcaagctggaatgaatgtcaatcatgccaagcttgtgccgtagagtgttgaaaggcccagggtgaagagatttagtaa--atatatc 115  Q
    ||||||| | ||||||||||||||||||| ||||||||||||||||||||  ||| | |||||||||| ||| |||||||  |||| ||||  ||||||     
T  28750381 ttatcattccccctcaagctggaatgaatctcaatcatgccaagcttgtgttgtaaaatgttgaaaggtccaaggtgaagttatttggtaaatatatata 28750282  T
Q  116 tgccacttgctctttggaagaaactgatagtacgtgaagtatgcttg 162  Q
    ||||||||| |||||||||||||| | || || |||||| |||||||    
T  28750281 tgccacttgttctttggaagaaaccggtattaggtgaagcatgcttg 28750235  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 27372028 - 27371914
Alignment:
Q  32 caagctggaatgaatgtcaatcatgccaagcttgtgccgtagagtgttgaaaggcccagggtgaagagatttagtaaatatatctgccacttgctctttg 131  Q
    |||||||||||  ||||||||||| |||||||||||||| ||| |||| || | |||||||||||| || || || ||||||||||| ||||  || |||    
T  27372028 caagctggaatagatgtcaatcattccaagcttgtgccgaagaatgttcaatgacccagggtgaagtgacttggtcaatatatctgctactttttccttg 27371929  T
Q  132 gaagaaactgatagt 146  Q
    ||||| |||| ||||    
T  27371928 gaagacactggtagt 27371914  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 146
Target Start/End: Complemental strand, 27462378 - 27462264
Alignment:
Q  32 caagctggaatgaatgtcaatcatgccaagcttgtgccgtagagtgttgaaaggcccagggtgaagagatttagtaaatatatctgccacttgctctttg 131  Q
    |||||||||||  ||||||||||| |||||||||||||| ||| |||| || | |||||||||||| || || || ||||||||||| ||||  || |||    
T  27462378 caagctggaatagatgtcaatcattccaagcttgtgccgaagaatgttcaatgacccagggtgaagtgacttggtcaatatatctgctactttttccttg 27462279  T
Q  132 gaagaaactgatagt 146  Q
    ||||| |||| ||||    
T  27462278 gaagacactggtagt 27462264  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 8467198 - 8467165
Alignment:
Q  391 attatgaatgtaacgtgcataaggttattttatc 424  Q
    |||||||||||||||| |||||||||||||||||    
T  8467198 attatgaatgtaacgttcataaggttattttatc 8467165  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 43578041 - 43577994
Alignment:
Q  18 ttatcatcctccctcaagctggaatgaatgtcaatcatgccaagcttg 65  Q
    ||||||||| |||||||||||||||  || ||||||||||||||||||    
T  43578041 ttatcatcccccctcaagctggaatagatatcaatcatgccaagcttg 43577994  T

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