View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_111 (Length: 240)
Name: NF9879_low_111
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_111 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 19330062 - 19330286
Alignment:
| Q |
14 |
aaaggaagagcttaaccatatgactggtgaggaaaatattgacgagctacatgcagctatactgagattcatcaagatctacggccgtgtgatcatataa |
113 |
Q |
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| T |
19330062 |
aaaggaagagcttaaccatatgactggtgaggaaaatattgatgagctacatgcagcta--ctgagattcatcaagatctacggccgtgtgatcatataa |
19330159 |
T |
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| Q |
114 |
tgatagacgactcgcagttttgtgatgtaagtcatgatatcaacaacacaacactttcagatgatgcggatgtcgtcaatcacacacatttcggtgaccc |
213 |
Q |
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| T |
19330160 |
tgatagatgactcacagttttgtgatgtaagtcacgatatcaacaacacaacactttcagatgacgccgatgacatcaatcacacacatttcggtgaccc |
19330259 |
T |
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| Q |
214 |
cgatgaggtcgatccactagaaatcaa |
240 |
Q |
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| T |
19330260 |
cgatgaggtcgatccactagaaatcaa |
19330286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 19356790 - 19357014
Alignment:
| Q |
14 |
aaaggaagagcttaaccatatgactggtgaggaaaatattgacgagctacatgcagctatactgagattcatcaagatctacggccgtgtgatcatataa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19356790 |
aaaggaagagcttaaccatatgactggtgaggaaaatattgatgagctacatgcagcta--ctgagattcatcaagatctacggccgtgtgatcatataa |
19356887 |
T |
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| Q |
114 |
tgatagacgactcgcagttttgtgatgtaagtcatgatatcaacaacacaacactttcagatgatgcggatgtcgtcaatcacacacatttcggtgaccc |
213 |
Q |
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| T |
19356888 |
tgatagatgactcacagttttgtgatgtaagtcacgatatcaacaacacaacactttcagatgacgccgatgacatcaatcacacacatttcggtgaccc |
19356987 |
T |
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| Q |
214 |
cgatgaggtcgatccactagaaatcaa |
240 |
Q |
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| T |
19356988 |
cgatgaggtcgatccactagaaatcaa |
19357014 |
T |
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