View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_112 (Length: 240)
Name: NF9879_low_112
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_112 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 22365852 - 22365652
Alignment:
| Q |
23 |
gttttccttttcctttttagaacaaggcggcaatcttgggcagatcgtaatgttcgtgtttgtattgaatttttaaaagtaagcttttgttttctatgcg |
122 |
Q |
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| T |
22365852 |
gttttccttttcctttttagaacaaggcggcaatcttgggcagatcgtaatgttcgtgtttgtattgaatttttaaaagtaagcttttgttttctatgca |
22365753 |
T |
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| Q |
123 |
aagtattgtttgtgtttctatgtattttaaaattaatgcagatgccctgtgtcattattcagcaaacttgattactgatgatgcaaaattgaaatgagta |
222 |
Q |
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| T |
22365752 |
aagtattgtttgtgtttctatgtattttaaaattaatgcagatgccctgtgtcattattcagcaaacttgattactgatgatgcgaaattgaaatgagta |
22365653 |
T |
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| Q |
223 |
t |
223 |
Q |
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| T |
22365652 |
t |
22365652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 40798279 - 40798377
Alignment:
| Q |
41 |
agaacaaggcggcaatcttgggcagatcgtaatgttcgtgtttgtattgaatttttaaaagtaagcttttgttttctatgcgaagtattgtttgtgttt |
139 |
Q |
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| T |
40798279 |
agaagaaggctgcaatcttgggtaaaacttaatgttcgtgttcgtattcagtttttataagttagggtttgtttcctatgcaaagtattgtttgtgttt |
40798377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 39701257 - 39701355
Alignment:
| Q |
41 |
agaacaaggcggcaatcttgggcagatcgtaatgttcgtgtttgtattgaatttttaaaagtaagcttttgttttctatgcgaagtattgtttgtgttt |
139 |
Q |
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| T |
39701257 |
agaagaaggctgcaatcttgggcaaaacgtaatgttcatgttcgtatttagcgtttaaaagtgagggtttgtttcctatgcaaagtattgtttgtgttt |
39701355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 7485585 - 7485683
Alignment:
| Q |
41 |
agaacaaggcggcaatcttgggcagatcgtaatgttcgtgtttgtattgaatttttaaaagtaagcttttgttttctatgcgaagtattgtttgtgttt |
139 |
Q |
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|||| ||||| ||||||||||||| | |||||||||| |||| ||||| | ||||||||| || ||||||| |||||| ||||||||||||||||| |
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| T |
7485585 |
agaagaaggctgcaatcttgggcaaaacgtaatgttcatgttcgtatttagcgtttaaaagtgagggtttgtttcctatgcaaagtattgtttgtgttt |
7485683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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