View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_118 (Length: 240)
Name: NF9879_low_118
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_118 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 6141445 - 6141340
Alignment:
| Q |
119 |
tgctaaggtttttgaagttgatcatctgaatattgttggtgg-actttaacaaattatcgatattctggtgatggtattctcacatatattacatatctt |
217 |
Q |
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| T |
6141445 |
tgctaaggcttttgaagttgattatctgaatattgttggtggaattttaacaaattgtagatattttggtgatggtattctcacata---aacatatctt |
6141349 |
T |
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| Q |
218 |
attgacctt |
226 |
Q |
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| T |
6141348 |
attgacctt |
6141340 |
T |
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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 65633 - 65550
Alignment:
| Q |
68 |
ttgagggattcttcaattacttattttggtaaactatattcatcaaatttgtgctaaggtttttgaagttgatcatctgaatatt |
152 |
Q |
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| T |
65633 |
ttgagggatgctttaattactt-ttatggtaaaatacactcgtcaaatatgtgctaaggtttttgaagttgatcatatgaatatt |
65550 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 27421730 - 27421813
Alignment:
| Q |
68 |
ttgagggattcttcaattacttattttggtaaactatattcatcaaatttgtgctaaggtttttgaagttgatcatctgaatatt |
152 |
Q |
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| T |
27421730 |
ttgagggatgctttaattactt-ttatggtaaaatacactcgtcaaatatgtgctaaggtttttgaagttgatcatatgaatatt |
27421813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 26651796 - 26651754
Alignment:
| Q |
110 |
tcaaatttgtgctaaggtttttgaagttgatcatctgaatatt |
152 |
Q |
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| T |
26651796 |
tcaaatatgtgccaaggtttttgaagttgatcatctgaatatt |
26651754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 152
Target Start/End: Complemental strand, 26757764 - 26757722
Alignment:
| Q |
110 |
tcaaatttgtgctaaggtttttgaagttgatcatctgaatatt |
152 |
Q |
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| T |
26757764 |
tcaaatatgtgccaaggtttttgaagttgatcatctgaatatt |
26757722 |
T |
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