View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_119 (Length: 240)
Name: NF9879_low_119
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_119 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 22507406 - 22507628
Alignment:
| Q |
18 |
catgagtatagagtgcgtgtgtgagagagaaagagaagcttcttctagcatgttgtaatatgataatgtgaatcaatagtctaatgccgtgccttttgct |
117 |
Q |
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| T |
22507406 |
catgattatagagagcgtgtgtgtgagagaaagagaagcttcttctagcatgttgtaatatgataatgagaatcaatagtctaatgccgtgccttttgct |
22507505 |
T |
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| Q |
118 |
ctcacgcttaagtgtatgatttagactttctatttcagcactgatttgctctggggttttcccatcacaacctcctagcgaagcaaggtcatcctgacgg |
217 |
Q |
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| T |
22507506 |
ctcacgcctaagtgtgtgatttagactttctatttcagcactgatttgctctggggttttcccatcacaacctcctagcgaagcaaggtcatcctgacgg |
22507605 |
T |
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| Q |
218 |
caaattatggaagcctttttaac |
240 |
Q |
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| T |
22507606 |
caaattatggaagcctttttaac |
22507628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 76 - 234
Target Start/End: Complemental strand, 13423115 - 13422957
Alignment:
| Q |
76 |
tatgataatgtgaatcaatagtctaatgccgtgccttttgctctcacgcttaagtgtatgatttagactttctatttcagcactgatttgctctggggtt |
175 |
Q |
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||||||||||||||||||||||||| || | |||||| |||||||||| |||||||||||||||||||||||| || | |||||||||||||||||| |
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| T |
13423115 |
tatgataatgtgaatcaatagtctagtgtcatgccttcggctctcacgcctaagtgtatgatttagactttctaattggccgctgatttgctctggggtt |
13423016 |
T |
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| Q |
176 |
ttcccatcacaacctcctagcgaagcaaggtcatcctgacggcaaattatggaagcctt |
234 |
Q |
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| T |
13423015 |
accccatcacaacctcctaacgtagcaagttcattctgacagcaaattatggaagcctt |
13422957 |
T |
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