View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_12 (Length: 542)
Name: NF9879_low_12
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 8 - 542
Target Start/End: Complemental strand, 42114161 - 42113627
Alignment:
| Q |
8 |
cagcacagaaaaaagcacagaaaaacaccaccaatgaaacgacgccgtaaatatcatcttcaggactccatagaacggtgaaggccaacgatacaacctg |
107 |
Q |
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| T |
42114161 |
cagcacagaaaaaagcacagaaaaacaccaccaatgaaacgacgccgtaaatatcatcttcaggactccatagaacggtgaaggccaacgacacaacctg |
42114062 |
T |
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| Q |
108 |
aagaggaagagccaccaaaacgacagaacccaatgcgtagattcgaatccttaatcctttgttaatcaccaatgataaaaccttccaacatgagaacaat |
207 |
Q |
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| T |
42114061 |
aagaggaagagccaccaaaacgacagaacccaatgcgtagattcgaatccttaatcctttgttaatcaccaatgataaaaccttccaacatgagaacaat |
42113962 |
T |
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| Q |
208 |
aaccatgcacaatatgcagcagcgaatgcggcgaacacaacgctgtttaagaacgggtaagcgcagagaacggtgtcgttttctagaataacaaatgttt |
307 |
Q |
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| T |
42113961 |
aaccatgcacaatatgcagcagagaatgccgcgaacacaacgctgtttaagaacgggtaagcacagagaacggtgtcgtcttctagaataacaaatgttt |
42113862 |
T |
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| Q |
308 |
gtcgtaacaacgccggaacacgatgttccaatggattgaaatagacaagtaaaccttgaagaatacctaatggaagacacgtgctaaacacaaaggttac |
407 |
Q |
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| T |
42113861 |
gtcgtaacaacgccggaacacgatgttccaatggattgaaatagacaagtaaaccttgaagaatacctaatggaagacacgtgctaaacacaaaggttac |
42113762 |
T |
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| Q |
408 |
agcccaaccgtcgtttggtgtcttttttctgatggaagcgttgaggagaaacaacaacgttaagagaaaagctggttcaaagaatccaagagaaaaaaca |
507 |
Q |
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| T |
42113761 |
agcccaaccgtcgtttggtgtcttttttctgatggaagcgttgaggagaaacaacaacgttaagagaaaagctggttcaaagaatccaagagaaaaaaca |
42113662 |
T |
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| Q |
508 |
atgtggattttgcagagattggcttgttgagtaat |
542 |
Q |
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| T |
42113661 |
atgtggattttgcagagattggcttgttgagtaat |
42113627 |
T |
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