View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_120 (Length: 239)

Name: NF9879_low_120
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_120
NF9879_low_120
[»] chr7 (21 HSPs)
chr7 (27-222)||(33853313-33853508)
chr7 (44-124)||(45557443-45557523)
chr7 (44-132)||(40561677-40561765)
chr7 (44-109)||(12306801-12306866)
chr7 (46-131)||(27571942-27572027)
chr7 (52-127)||(29829293-29829368)
chr7 (44-109)||(40491656-40491721)
chr7 (44-126)||(25156278-25156360)
chr7 (46-109)||(1442651-1442714)
chr7 (45-124)||(17111924-17112003)
chr7 (57-149)||(1766481-1766573)
chr7 (45-86)||(41010035-41010076)
chr7 (44-119)||(38123598-38123673)
chr7 (54-124)||(38230121-38230191)
chr7 (44-86)||(40795954-40795996)
chr7 (52-109)||(15311217-15311274)
chr7 (44-125)||(22310385-22310466)
chr7 (54-131)||(45823259-45823336)
chr7 (61-109)||(20088929-20088977)
chr7 (60-100)||(40728738-40728778)
chr7 (56-124)||(48459765-48459833)
[»] chr4 (29 HSPs)
chr4 (47-131)||(33843792-33843876)
chr4 (62-128)||(48045675-48045741)
chr4 (45-124)||(41751199-41751278)
chr4 (48-90)||(36639877-36639919)
chr4 (44-79)||(8604594-8604629)
chr4 (56-143)||(38716678-38716765)
chr4 (27-90)||(47144275-47144338)
chr4 (52-149)||(22994262-22994360)
chr4 (44-150)||(54487193-54487299)
chr4 (44-90)||(55927731-55927777)
chr4 (48-113)||(20712752-20712817)
chr4 (52-149)||(22699757-22699854)
chr4 (52-149)||(22980676-22980773)
chr4 (56-109)||(38740316-38740369)
chr4 (27-131)||(22683925-22684029)
chr4 (56-124)||(51922959-51923027)
chr4 (44-79)||(35065141-35065176)
chr4 (52-127)||(46958038-46958113)
chr4 (44-98)||(1023871-1023925)
chr4 (52-110)||(28947762-28947820)
chr4 (44-109)||(17898071-17898135)
chr4 (44-109)||(22250304-22250369)
chr4 (102-150)||(5835829-5835877)
chr4 (56-124)||(16566324-16566392)
chr4 (56-124)||(19592230-19592298)
chr4 (51-127)||(29114804-29114880)
chr4 (58-150)||(36150625-36150717)
chr4 (56-124)||(46830068-46830136)
chr4 (27-127)||(47314926-47315025)
[»] chr3 (31 HSPs)
chr3 (43-150)||(51285647-51285754)
chr3 (44-127)||(5406982-5407061)
chr3 (44-111)||(3776600-3776667)
chr3 (58-126)||(35058446-35058514)
chr3 (45-124)||(14022052-14022131)
chr3 (44-103)||(41591301-41591360)
chr3 (27-126)||(46853459-46853558)
chr3 (44-109)||(1441349-1441414)
chr3 (27-129)||(36302244-36302348)
chr3 (52-110)||(7012670-7012728)
chr3 (57-150)||(27052283-27052376)
chr3 (48-109)||(31013100-31013161)
chr3 (56-109)||(31766189-31766242)
chr3 (44-109)||(35253409-35253474)
chr3 (45-109)||(37334976-37335040)
chr3 (45-125)||(49526667-49526747)
chr3 (27-106)||(7262875-7262954)
chr3 (45-92)||(35264370-35264417)
chr3 (57-156)||(41459250-41459349)
chr3 (44-109)||(30958114-30958180)
chr3 (44-109)||(30973926-30973992)
chr3 (44-90)||(41596110-41596156)
chr3 (44-109)||(584735-584800)
chr3 (44-109)||(25129481-25129546)
chr3 (44-97)||(31708193-31708246)
chr3 (56-124)||(3348277-3348345)
chr3 (61-109)||(10852727-10852775)
chr3 (49-109)||(32523276-32523336)
chr3 (63-131)||(42484420-42484488)
chr3 (102-130)||(49356300-49356328)
chr3 (56-124)||(50664792-50664860)
[»] chr2 (20 HSPs)
chr2 (44-127)||(1976788-1976871)
chr2 (58-146)||(30503299-30503387)
chr2 (44-118)||(4894090-4894164)
chr2 (54-131)||(3476349-3476426)
chr2 (45-124)||(3853932-3854011)
chr2 (27-92)||(15220820-15220885)
chr2 (52-127)||(23359924-23359999)
chr2 (44-123)||(40401571-40401650)
chr2 (47-109)||(4119369-4119431)
chr2 (54-124)||(7632521-7632591)
chr2 (59-124)||(10918649-10918714)
chr2 (44-97)||(16518856-16518909)
chr2 (57-109)||(12110918-12110970)
chr2 (44-79)||(4908868-4908903)
chr2 (44-90)||(680251-680297)
chr2 (44-98)||(7649299-7649353)
chr2 (58-119)||(488645-488706)
chr2 (56-124)||(1945036-1945104)
chr2 (45-109)||(16519523-16519587)
chr2 (52-124)||(38002777-38002849)
[»] chr8 (18 HSPs)
chr8 (44-149)||(2778591-2778696)
chr8 (44-110)||(16972005-16972071)
chr8 (44-109)||(32927970-32928035)
chr8 (45-109)||(10368044-10368108)
chr8 (49-131)||(32767472-32767552)
chr8 (56-109)||(1373081-1373134)
chr8 (40-121)||(4402873-4402953)
chr8 (52-109)||(19649224-19649281)
chr8 (44-124)||(22552739-22552819)
chr8 (44-109)||(32994182-32994249)
chr8 (44-79)||(43492209-43492244)
chr8 (44-109)||(9461481-9461545)
chr8 (49-110)||(24774959-24775020)
chr8 (44-109)||(35495068-35495133)
chr8 (45-110)||(38516329-38516394)
chr8 (44-88)||(2764432-2764476)
chr8 (58-90)||(4950575-4950607)
chr8 (44-92)||(38335820-38335868)
[»] chr6 (20 HSPs)
chr6 (44-121)||(34620964-34621041)
chr6 (44-121)||(34748401-34748478)
chr6 (54-127)||(28466908-28466981)
chr6 (54-127)||(34736752-34736825)
chr6 (67-155)||(34026381-34026469)
chr6 (44-122)||(882764-882842)
chr6 (44-124)||(34911023-34911100)
chr6 (45-113)||(3798979-3799047)
chr6 (47-131)||(19601372-19601456)
chr6 (27-127)||(1485070-1485170)
chr6 (44-118)||(34063390-34063464)
chr6 (46-102)||(25195126-25195181)
chr6 (62-109)||(7953079-7953126)
chr6 (45-79)||(957595-957629)
chr6 (44-78)||(4910986-4911020)
chr6 (81-131)||(34898810-34898859)
chr6 (55-109)||(35098400-35098454)
chr6 (44-109)||(1499978-1500043)
chr6 (44-92)||(3289823-3289870)
chr6 (44-132)||(30926698-30926786)
[»] chr5 (14 HSPs)
chr5 (51-127)||(34250278-34250354)
chr5 (44-126)||(15368551-15368632)
chr5 (44-127)||(36927611-36927694)
chr5 (52-110)||(22811070-22811128)
chr5 (45-90)||(4306591-4306636)
chr5 (44-108)||(117439-117503)
chr5 (56-124)||(22482237-22482305)
chr5 (53-124)||(18637370-18637441)
chr5 (44-106)||(28973935-28973997)
chr5 (56-109)||(14299416-14299469)
chr5 (44-109)||(14671103-14671167)
chr5 (59-124)||(19784864-19784929)
chr5 (50-99)||(34101857-34101906)
chr5 (51-107)||(35138967-35139023)
[»] chr1 (33 HSPs)
chr1 (44-146)||(34915144-34915246)
chr1 (44-131)||(18325029-18325115)
chr1 (44-109)||(5268297-5268362)
chr1 (44-109)||(15515011-15515076)
chr1 (59-131)||(47978354-47978426)
chr1 (40-79)||(32370003-32370042)
chr1 (44-99)||(35961446-35961501)
chr1 (52-110)||(4347028-4347086)
chr1 (46-131)||(6932104-6932189)
chr1 (57-126)||(25061285-25061354)
chr1 (56-124)||(20800277-20800345)
chr1 (44-92)||(27849218-27849266)
chr1 (49-89)||(33693085-33693125)
chr1 (56-124)||(35569202-35569270)
chr1 (60-124)||(47053505-47053569)
chr1 (46-78)||(48635165-48635197)
chr1 (44-79)||(213253-213288)
chr1 (54-109)||(47892337-47892391)
chr1 (27-90)||(48548975-48549038)
chr1 (44-150)||(34571084-34571190)
chr1 (48-124)||(5868158-5868235)
chr1 (44-109)||(7524191-7524256)
chr1 (61-110)||(13344836-13344885)
chr1 (44-109)||(15477949-15478014)
chr1 (44-109)||(34875031-34875096)
chr1 (44-109)||(45660548-45660612)
chr1 (44-88)||(12119388-12119432)
chr1 (82-126)||(28287258-28287302)
chr1 (57-109)||(29759710-29759762)
chr1 (58-110)||(40352451-40352503)
chr1 (54-157)||(40662885-40662989)
chr1 (56-124)||(42850219-42850287)
chr1 (99-155)||(43541576-43541632)
[»] scaffold0361 (1 HSPs)
scaffold0361 (44-109)||(14056-14121)
[»] scaffold0172 (1 HSPs)
scaffold0172 (57-109)||(15271-15323)
[»] scaffold0009 (1 HSPs)
scaffold0009 (52-110)||(199382-199440)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 33853508 - 33853313
Alignment:
Q  27 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33853508 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 33853409  T
Q  127 tgtcatatcataaccaaacacacaataaatgaaactcagtctgtaacacatttatgataatagcgtttcgttcacatcgaatgaaagtaactaaag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33853408 tgtcatatcataaccaaacacacaataaatgaaactcagtctgtaacacatttatgataatagcgtttcgttcacatcgaatgaaagtaactaaag 33853313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 45557443 - 45557523
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||| | ||||||||||    
T  45557443 cttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaattcattcaaaatcaatt 45557523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 40561765 - 40561677
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcat 132  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| | ||  | |||||||||||||| |||||||| |||||||||    
T  40561765 cttttacatgaatgtatccaaacataaatcactttactttcaactcaatttttactagaatcaattcactcaaaatcaacttttgtcat 40561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 12306801 - 12306866
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||||| || ||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  12306801 cttttacatgaatctagccaaacataaatcactttatcttcaactcacttttagccagaatcaatt 12306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 27571942 - 27572027
Alignment:
Q  46 tttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    ||||||| ||||||||||| ||||||||| |||| ||| |||||||| ||||||| |||||||||||  |||||||||||||||||    
T  27571942 tttacataaatgtatccaaccataaatcattttacctttaactcacttttagccataatcaattcacccaaaatcaatttttgtca 27572027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 29829368 - 29829293
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 127  Q
    ||||||||||||||||||||||||||||  ||||||||| | |||||||||||||||||| | | |||||||||||    
T  29829368 tgaatgtatccaaacataaatcactttacattcaactcatttttagccagaatcaattcattcagaatcaattttt 29829293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 40491656 - 40491721
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| |||| || ||||||||    
T  40491656 cttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaatt 40491721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 25156278 - 25156360
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 126  Q
    |||||| |||||||||| |||||| |||||| |||| |||||||||| | |||| |||||| || ||||||||||||||||||    
T  25156278 cttttatatgaatgtattcaaacacaaatcattttatcttcaactcatttttagtcagaattaaatcactaaaaatcaatttt 25156360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 1442651 - 1442714
Alignment:
Q  46 tttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||| ||||||| ||||||| || ||||||||| |||| |||||||||||    
T  1442651 tttacatgaatgtatccatacataaaccactttacctgcaactcacttttagtcagaatcaatt 1442714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 17111924 - 17112003
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||| ||||||||| ||||||||||| || ||| ||| | |||| || |||||||||||| ||||||||||    
T  17111924 ttttacatgaatgcatccaaacacaaatcactttacctacaattcaattttagtcaaaatcaattcactcaaaatcaatt 17112003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 149
Target Start/End: Original strand, 1766481 - 1766573
Alignment:
Q  57 gtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaaacacac 149  Q
    ||||||||| |||||||| ||||| ||||||||||| |||  || |||||||| | | |||||||||| | |||| | |||||||||||||||    
T  1766481 gtatccaaatataaatcaatttaggttcaactcacttttaatcaaaatcaatttaatcaaaatcaattctcgtcacaacataaccaaacacac 1766573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 41010035 - 41010076
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaa 86  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  41010035 ttttacatgaatgtatccaaacataaattactttaccttcaa 41010076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 38123673 - 38123598
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaat 119  Q
    ||||||||||||||| ||| |||| |||| |||||| |||||||||| | |||| || |||||||| ||| |||||    
T  38123673 cttttacatgaatgtgtccgaacacaaattactttaccttcaactcaattttagtcataatcaatttactcaaaat 38123598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 38230121 - 38230191
Alignment:
Q  54 aatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||||| || |  ||||||||||| ||| ||| ||||||||| || ||| ||||||    
T  38230121 aatgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctcttaaattcaatt 38230191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 40795996 - 40795954
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaa 86  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||    
T  40795996 cttttacatgaatgtatccaatcataaaccactttaccttcaa 40795954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 15311274 - 15311217
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||||||||||||||||| ||  ||||||||||| ||| ||| | ||||||    
T  15311274 tgaatgtatccaaacataaatcactatacattcaactcacttttaaccatattcaatt 15311217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 22310466 - 22310385
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattt 125  Q
    |||||||  |||||||||||||||||||||  |||| |||||||||| | ||  ||| | ||||| |||| |||||||||||    
T  22310466 cttttacgagaatgtatccaaacataaatctttttatcttcaactcaatttttaccaaactcaatccactcaaaatcaattt 22310385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 45823259 - 45823336
Alignment:
Q  54 aatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    |||||||||||||||||||||| ||   ||||||||||| ||   |  |||||||||| | |||||||||||||||||    
T  45823259 aatgtatccaaacataaatcacatttcattcaactcacttttgatcgaaatcaattcaatcaaaatcaatttttgtca 45823336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 20088929 - 20088977
Alignment:
Q  61 ccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||||  ||||||||||| ||| ||| ||||||||    
T  20088929 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaatt 20088977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 40728738 - 40728778
Alignment:
Q  60 tccaaacataaatcactttagcttcaactcactcttagcca 100  Q
    |||||||||||||||||||| |||||||||||  |||||||    
T  40728738 tccaaacataaatcactttaccttcaactcacatttagcca 40728778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 48459765 - 48459833
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || |  ||||||||||| ||| ||| ||||||||| || ||| ||||||    
T  48459765 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 48459833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 33843792 - 33843876
Alignment:
Q  47 ttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    |||||||||| ||||||||||||||||||||||  | ||||||||| |||||||||||||||||| | |||||||||||||||||    
T  33843792 ttacatgaatatatccaaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaaatcaatttttgtca 33843876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 48045741 - 48045675
Alignment:
Q  62 caaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttg 128  Q
    |||||||||||||||||| |||||||||| | |||||||||||||||| ||| ||||||||||||||    
T  48045741 caaacataaatcactttatcttcaactcagttttagccagaatcaatttactcaaaatcaatttttg 48045675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 41751278 - 41751199
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    |||||||||||||||| ||||||| |||||||||| ||| |||||||| |||  || ||| |||||||| ||||||||||    
T  41751278 ttttacatgaatgtattcaaacattaatcactttatcttgaactcacttttaaacaaaataaattcactcaaaatcaatt 41751199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 36639877 - 36639919
Alignment:
Q  48 tacatgaatgtatccaaacataaatcactttagcttcaactca 90  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  36639877 tacatgaatgtatccaaacataaatcactttatcttcaactca 36639919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 8604629 - 8604594
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcacttta 79  Q
    ||||||||||||||||||||||||||||||||||||    
T  8604629 cttttacatgaatgtatccaaacataaatcacttta 8604594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 38716678 - 38716765
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaa 143  Q
    |||||| |||||||||| | |||| || |||||||||||||| ||||||||||| ||| ||||| |  |||||||| | |||||||||    
T  38716678 tgtatcgaaacataaattattttacctgcaactcactcttagtcagaatcaatttactcaaaattatattttgtcaaaacataaccaa 38716765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 47144275 - 47144338
Alignment:
Q  27 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactca 90  Q
    |||||||||||| ||  |||||| |||||||||||||||||||||||| | || ||||||||||    
T  47144275 atttattgtccaactaacttttagatgaatgtatccaaacataaatcaatatatcttcaactca 47144338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 22994360 - 22994262
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca-tatcataaccaaacacac 149  Q
    |||| |||||||||||||||||||||||  ||||||| ||| ||| ||| |||||||||    ||||||||||||| |||  |||| ||||||||||||    
T  22994360 tgaaggtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaatttttttcaccatcacaaccaaacacac 22994262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 54487299 - 54487193
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaa 143  Q
    |||| |||| ||||||||||||||||||||| ||||  ||||||||||| ||   |  |||||||||  | ||| ||||||||| ||||  |||||||||    
T  54487299 ctttcacatcaatgtatccaaacataaatcaatttacattcaactcacttttgatcgaaatcaattctatcaaactcaatttttatcatcgcataaccaa 54487200  T
Q  144 acacaca 150  Q
    |||||||    
T  54487199 acacaca 54487193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 55927777 - 55927731
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactca 90  Q
    |||||||||||||||||||||||||||||||| ||| || |||||||    
T  55927777 cttttacatgaatgtatccaaacataaatcacattaactccaactca 55927731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 20712817 - 20712752
Alignment:
Q  48 tacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcact 113  Q
    ||||||| |||||||||||| |||| |||||| |||||||||| | |||| | |||||||||||||    
T  20712817 tacatgattgtatccaaacacaaataactttaccttcaactcatttttagtcggaatcaattcact 20712752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 22699757 - 22699854
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaaacacac 149  Q
    |||| |||||||||||||||||||||||  ||||||| ||| ||| ||| |||||||||    ||||||||||||| |||   || ||||||||||||    
T  22699757 tgaaggtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaatttttttcaccgcacaaccaaacacac 22699854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 22980773 - 22980676
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaaacacac 149  Q
    |||| |||||||||||||||||||||||  ||||||| ||| ||| ||| |||||||||    ||||||||||||| |||   || ||||||||||||    
T  22980773 tgaaggtatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaatttttttcaccacacaaccaaacacac 22980676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 38740369 - 38740316
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||||||| | |||||||||||| ||| ||| ||||||||    
T  38740369 tgtatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaatt 38740316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 22683925 - 22684029
Alignment:
Q  27 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 126  Q
    ||||||||| || || |||||||||| ||||| |||||||||||| || ||||  ||||||||||| |||   | ||||||||||   |||||| |||||    
T  22683925 atttattgttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactcacttttaagtaaaatcaattcatctaaaatctatttt 22684024  T
Q  127 tgtca 131  Q
    |||||    
T  22684025 tgtca 22684029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 51922959 - 51923027
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || || ||||||||||| ||| ||| ||||||||| || ||| ||||||    
T  51922959 tgtatccaaacataaatcaattcagattcaactcacttttaaccaaaatcaattctctcaaactcaatt 51923027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 35065141 - 35065176
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcacttta 79  Q
    |||||||||||||||||||||||| |||||||||||    
T  35065141 cttttacatgaatgtatccaaacacaaatcacttta 35065176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 46958038 - 46958113
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 127  Q
    |||| ||| |||||||||||| ||||||  ||||||||||| ||| ||| |||||||||  | |||||||||||||    
T  46958038 tgaaggtaaccaaacataaattactttacgttcaactcacttttaaccaaaatcaattctatcaaaatcaattttt 46958113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 1023925 - 1023871
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagc 98  Q
    |||| |||| ||| |||||||||| ||||||||||| |||||||||||| |||||    
T  1023925 ctttcacatcaatatatccaaacaaaaatcactttaccttcaactcacttttagc 1023871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 28947820 - 28947762
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattc 110  Q
    |||| ||| |||||||||||||||||||  ||||||||||| ||| ||| |||||||||    
T  28947820 tgaaggtaaccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattc 28947762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 17898135 - 17898071
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||| | ||| ||||||||||||||||||||||  ||||||||||| | || |||||||||||    
T  17898135 cttttacctaaatatatccaaacataaatcactttacattcaactcactttcag-cagaatcaatt 17898071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 22250304 - 22250369
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||||||||||||||  |||||||||| |  |||||||| || |||| || ||||||||    
T  22250304 cttttacatgaatgtatccaaatgtaaatcacttcacattcaactcgcttttagtcataatcaatt 22250369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 5835829 - 5835877
Alignment:
Q  102 aatcaattcactaaaaatcaatttttgtcatatcataaccaaacacaca 150  Q
    |||||||||| | |||||||||||| |||| | ||||||||||||||||    
T  5835829 aatcaattcaatcaaaatcaattttcgtcacaacataaccaaacacaca 5835877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 16566324 - 16566392
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || |  ||||||||||| ||| ||| ||||||||| || ||| ||||||    
T  16566324 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 16566392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 19592298 - 19592230
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || |  | ||||||||| ||| ||| ||||||||| |||||| ||||||    
T  19592298 tgtatccaaacataaatcaattcacttccaactcacttttaaccaaaatcaattctctaaaactcaatt 19592230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 29114804 - 29114880
Alignment:
Q  51 atgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 127  Q
    ||||||||||||||||| |||| ||  || |||||||||||| |||  || ||||||| || | |||||||||||||    
T  29114804 atgaatgtatccaaacacaaattaccataccttcaactcacttttaatcataatcaatacaatcaaaatcaattttt 29114880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 36150625 - 36150717
Alignment:
Q  58 tatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaaacacaca 150  Q
    ||||||||||||||||||||||  ||||||||||| |||  || ||||||||   | |||||||||| | ||||   || |||||||||||||    
T  36150625 tatccaaacataaatcactttacattcaactcacttttaatcaaaatcaattatatcaaaatcaattctcgtcaccgcacaaccaaacacaca 36150717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 46830136 - 46830068
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || |  | ||||||||| ||| ||| |||||||||||| ||| ||||||    
T  46830136 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaattcacttaaactcaatt 46830068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 47315025 - 47314926
Alignment:
Q  27 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 126  Q
    ||||||| |||| ||| |||||||||| ||| |||||||| ||||||| ||||  | || |||| | ||||| | |||||||||| | ||||||||||||    
T  47315025 atttattttccaacttacttttacatgtatgcatccaaacctaaatcaatttacttgcatctcaattttagcta-aatcaattcattcaaaatcaatttt 47314927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 51285647 - 51285754
Alignment:
Q  43 gcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataacca 142  Q
    |||||||||||||||||||||| ||| ||| ||||||  ||||||||||| ||||||| ||| |||||||| ||||||||||||| |||   || |||||    
T  51285647 gcttttacatgaatgtatccaagcatgaattactttacattcaactcacttttagccataataaattcactcaaaatcaatttttctcaccgcaaaacca 51285746  T
Q  143 aacacaca 150  Q
    ||||||||    
T  51285747 aacacaca 51285754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 5406982 - 5407061
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 127  Q
    |||||||||||||||||||||||||||    ||||| |||||||||| | ||||| |||||||||||||| |||||||||||||    
T  5406982 cttttacatgaatgtatccaaacataa----ctttaccttcaactcaattttagctagaatcaattcactcaaaatcaattttt 5407061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 3776600 - 3776667
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattca 111  Q
    ||||||||| ||||||||||| ||||||||||||||  ||||||||| | ||||||||||||||||||    
T  3776600 cttttacatcaatgtatccaagcataaatcactttacattcaactcaattttagccagaatcaattca 3776667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 35058446 - 35058514
Alignment:
Q  58 tatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 126  Q
    |||||||||||||| ||||||| |||||||||||| ||||  ||||||||| |||| ||||||||||||    
T  35058446 tatccaaacataaagcactttatcttcaactcacttttagttagaatcaatccactcaaaatcaatttt 35058514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 14022052 - 14022131
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||| ||||||||||||||||| |||| |||||| || ||||||||| ||||  ||||| |||||||| ||||||||||    
T  14022052 ttttaaatgaatgtatccaaacacaaattactttatctgcaactcacttttagatagaataaattcactcaaaatcaatt 14022131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 41591360 - 41591301
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaa 103  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| | ||||| ||||    
T  41591360 cttttacatgaatgtatccaaacataaatcactttaaattcaactcatttttagcaagaa 41591301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 46853558 - 46853459
Alignment:
Q  27 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 126  Q
    ||||||||| || ||  ||||||||| ||| |||||  ||||||||||||||| |||||||| |||  |||||| |||||||||||| || |||||||||    
T  46853558 atttattgttcaactcacttttacataaatatatcctgacataaatcactttaccttcaacttacttgtagccaaaatcaattcactcaagatcaatttt 46853459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 1441414 - 1441349
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||| |||||||||| ||||| |||||||||||  ||||||||||| |||| |||||||||||    
T  1441414 cttttacgtgaatgtatctaaacacaaatcactttacgttcaactcacttttagacagaatcaatt 1441349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 36302244 - 36302348
Alignment:
Q  27 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcacttt--agcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||| || ||  |||||||||||||| ||||| |||| ||||| |||  | |||||||||| | ||| || ||||||||||||| ||||||||||    
T  36302244 atttattgttcaactcacttttacatgaatgaatccacacattaatcattttttatcttcaactcaattttaaccggaatcaattcactcaaaatcaatt 36302343  T
Q  125 tttgt 129  Q
    |||||    
T  36302344 tttgt 36302348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 7012670 - 7012728
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattc 110  Q
    |||| |||||||||||||||||||||||  ||||||||||| ||| ||| |||||||||    
T  7012670 tgaaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattc 7012728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 27052283 - 27052376
Alignment:
Q  57 gtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaaacacaca 150  Q
    |||||||||||||||| |||| |  ||||||||||| ||   ||||||||||||| | |||||||| ||||||||   ||||| ||||||||||    
T  27052283 gtatccaaacataaatgacttcattttcaactcacttttgatcagaatcaattcattcaaaatcaaattttgtcaccgcataatcaaacacaca 27052376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 31013100 - 31013161
Alignment:
Q  48 tacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||| |||| | |||||||||    
T  31013100 tacatgaatgcatccaaacacaaatcactttatctacaactcacttttagtcggaatcaatt 31013161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 31766242 - 31766189
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||| ||| ||||    
T  31766242 tgtatccaaacataaatcactttaacttcaactcacttttatccaaaattaatt 31766189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 35253474 - 35253409
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||| ||| |||||| ||||||||||||| ||| |||||| | ||||||| ||||||||    
T  35253474 cttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagccaaaatcaatt 35253409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 37335040 - 37334976
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||| |||||||||| || ||||||||||||||| |||||||||| | |||| | |||||||||    
T  37335040 ttttatatgaatgtattcagacataaatcactttaccttcaactcaattttagtcggaatcaatt 37334976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 49526747 - 49526667
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattt 125  Q
    |||||||||||||||||||||||||||||| ||||   |||| ||||| |||  || |||||||||  | |||||||||||    
T  49526747 ttttacatgaatgtatccaaacataaatcaatttacaatcaattcacttttaatcaaaatcaattctatcaaaatcaattt 49526667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 7262875 - 7262954
Alignment:
Q  27 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatca 106  Q
    |||||| ||||| ||  |||||||||||||||||| ||||||||| || | || ||||||||||||  || |||||||||    
T  7262875 atttatcgtccaactcacttttacatgaatgtatcaaaacataaaacattataccttcaactcacttctatccagaatca 7262954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 35264417 - 35264370
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcact 92  Q
    ||||||||||||||| |||||||||| ||||||||  |||||||||||    
T  35264417 ttttacatgaatgtacccaaacataactcactttactttcaactcact 35264370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 41459250 - 41459349
Alignment:
Q  57 gtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaaacacacaataaat 156  Q
    |||| ||||||||||||| |||| |||||| ||||| ||| ||| | |||||||| | |||||||||||| ||||    | ||||||||||||| |||||    
T  41459250 gtattcaaacataaatcaatttatcttcaaatcacttttaaccaaagtcaattcaatcaaaatcaattttcgtcaccatagaaccaaacacacactaaat 41459349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 30958114 - 30958180
Alignment:
Q  44 cttttacatgaatgtatccaaacataaat-cactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||||| |||||||||||||||  ||||||  ||||||||||  ||||||| ||||||||    
T  30958114 cttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaatt 30958180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 30973926 - 30973992
Alignment:
Q  44 cttttacatgaatgtatccaaacataaat-cactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||||| |||||||||||||||  ||||||  ||||||||||  ||||||| ||||||||    
T  30973926 cttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaatt 30973992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 41596156 - 41596110
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactca 90  Q
    ||||| |||||||||||||||||| |||||||||||  |||||||||    
T  41596156 cttttccatgaatgtatccaaacagaaatcactttacattcaactca 41596110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 584800 - 584735
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||| |||||||||||||| |||||  ||||||||||||| | | ||||| | ||||||||    
T  584800 cttttacataaatgtatccaaacagaaatccatttagcttcaacttaattttagctaaaatcaatt 584735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 25129546 - 25129481
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||| |||  ||||||||||||||||| |||  ||||||||||| ||| || |||||||||    
T  25129546 cttttacataaatacatccaaacataaatcacgttacattcaactcacttttatcctgaatcaatt 25129481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 31708246 - 31708193
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttag 97  Q
    |||||||||||||||||||||||| ||| ||||||| |  ||||||||| ||||    
T  31708246 cttttacatgaatgtatccaaacacaaaccactttatcagcaactcacttttag 31708193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 3348277 - 3348345
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| ||||  | |||||||||  || ||| |||||||||||| ||| ||||||    
T  3348277 tgtatccaaacataaatcaatttacatccaactcacttctaaccaaaatcaattcacttaaactcaatt 3348345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 10852775 - 10852727
Alignment:
Q  61 ccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||||  ||||||||||| ||| ||| ||||||||    
T  10852775 ccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 10852727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 32523336 - 32523276
Alignment:
Q  49 acatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||| ||||||||| ||||||||||| |||||||| ||| |||  || ||||||||    
T  32523336 acatgaatgcatccaaacacaaatcactttatcttcaactaacttttaatcaaaatcaatt 32523276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 42484488 - 42484420
Alignment:
Q  63 aaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    ||||| ||||||||||| || |||| |||| ||| |||||||||||||||| | ||| |||| ||||||    
T  42484488 aaacacaaatcactttacctgcaacccacttttaaccagaatcaattcactcataattaattcttgtca 42484420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 130
Target Start/End: Complemental strand, 49356328 - 49356300
Alignment:
Q  102 aatcaattcactaaaaatcaatttttgtc 130  Q
    |||||||||||||||||||||||||||||    
T  49356328 aatcaattcactaaaaatcaatttttgtc 49356300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 50664792 - 50664860
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || |  ||||||||||| ||| ||| ||||||||| || ||| ||||||    
T  50664792 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 50664860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 1976871 - 1976788
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 127  Q
    ||||||||||||||||||||||||||| || ||||| |||||||||| |  ||||||||||||||||||| |||| ||||||||    
T  1976871 cttttacatgaatgtatccaaacataagtcgctttaccttcaactcaattctagccagaatcaattcactcaaaaacaattttt 1976788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 30503299 - 30503387
Alignment:
Q  58 tatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaaaca 146  Q
    |||||||||| |||||| |||| |||||||| ||| |||| ||||||||||||||| |||||| ||| |||||||  ||||||||||||    
T  30503299 tatccaaacaaaaatcagtttaccttcaactaacttttagtcagaatcaattcactcaaaatcgattattgtcattgcataaccaaaca 30503387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 4894164 - 4894090
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaa 118  Q
    |||||| ||||||||||| ||||||||||||||||| |||||||| | | ||||| |||||||||||||| ||||    
T  4894164 cttttaaatgaatgtatctaaacataaatcactttaccttcaacttaattttagctagaatcaattcactcaaaa 4894090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 3476426 - 3476349
Alignment:
Q  54 aatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    |||||||| ||||||| ||||||| |  |||| |||||| ||| |||||||||||||||| |||||||||||||||||    
T  3476426 aatgtatctaaacatatatcacttcactttcagctcacttttatccagaatcaattcacttaaaatcaatttttgtca 3476349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 3853932 - 3854011
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||| |||  || |||||||||  | ||||||||||    
T  3853932 ttttacatgaatgtatccaaacataaatcaatttacattcaactcacttttaatcaaaatcaattctatcaaaatcaatt 3854011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 15220885 - 15220820
Alignment:
Q  27 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcact 92  Q
    ||||||||| || ||  |||| |||||||||||||||||||||||||||||||  |||||||||||    
T  15220885 atttattgttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcact 15220820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 23359999 - 23359924
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 127  Q
    |||| |||||||||||||||||||||||  ||||||||||| ||| ||| |||||||||    |||||||||||||    
T  23359999 tgaaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctaccaaaatcaattttt 23359924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 40401650 - 40401571
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaat 123  Q
    ||||||||||||||||||||||||||||| | | || |||||||||| | ||||   ||| ||||||||| |||||||||    
T  40401650 cttttacatgaatgtatccaaacataaattagtctaccttcaactcatttttagtaggaaccaattcactcaaaatcaat 40401571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 4119431 - 4119369
Alignment:
Q  47 ttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||| ||||||||||||||||||  ||  ||||||| ||||| ||||||||||    
T  4119431 ttacatgaatgtattcaaacataaatcactttacattagactcacttttagctagaatcaatt 4119369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 7632591 - 7632521
Alignment:
Q  54 aatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    |||||||||||||| | ||||||||| |||||| ||||| |||  |||||| |||||||| ||||||||||    
T  7632591 aatgtatccaaacacatatcactttaccttcaattcacttttaatcagaataaattcactcaaaatcaatt 7632521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 10918649 - 10918714
Alignment:
Q  59 atccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    |||||||||||||||||||||  ||||||||||| ||| ||| |||||||||| | ||||| ||||    
T  10918649 atccaaacataaatcactttacattcaactcacttttatccaaaatcaattcagtcaaaattaatt 10918714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 16518856 - 16518909
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttag 97  Q
    |||||||||||||||||||||||| |||||| |||| | |||||||||| ||||    
T  16518856 cttttacatgaatgtatccaaacacaaatcattttaccctcaactcacttttag 16518909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 12110918 - 12110970
Alignment:
Q  57 gtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||||||||  ||||||||||| ||| ||| ||||||||    
T  12110918 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatt 12110970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 4908868 - 4908903
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcacttta 79  Q
    |||| |||||||||||||||||||||||||||||||    
T  4908868 ctttaacatgaatgtatccaaacataaatcacttta 4908903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 680297 - 680251
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactca 90  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||||||    
T  680297 cttttacatgaatgtatgcaaacacaaaacactttaccttcaactca 680251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 7649299 - 7649353
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagc 98  Q
    ||||||||| ||| |||||||| ||||||||||||| || ||||||||| |||||    
T  7649299 cttttacataaatttatccaaaaataaatcactttacctccaactcacttttagc 7649353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 488645 - 488706
Alignment:
Q  58 tatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaat 119  Q
    |||| ||||||||||||||||| |||||| |||   |||||| ||||||||||||| |||||    
T  488645 tatcaaaacataaatcactttaccttcaaatcaactttagccggaatcaattcactcaaaat 488706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 1945104 - 1945036
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || |  ||||||||||| ||| ||| ||||||||| || ||| ||||||    
T  1945104 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaactcaatt 1945036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 16519523 - 16519587
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||| ||||||||||||  || |||||||||||||  ||||| |||||  |||||||||||||||    
T  16519523 ttttgcatgaatgtatcagaatataaatcactttactttcaattcacttctagccagaatcaatt 16519587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 38002777 - 38002849
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    |||||||||| |||||||||| |||||| || ||| | ||| |||  || |||||||||||| ||||||||||    
T  38002777 tgaatgtatctaaacataaatgactttatctacaattaacttttaatcaaaatcaattcactcaaaatcaatt 38002849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 2778591 - 2778696
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaa 143  Q
    ||||| ||| ||| |||||||| ||||||||||||| |||||||||||| ||||| ||||||| |||||  ||||||||||||||||    |||||||||    
T  2778591 cttttgcataaatttatccaaaaataaatcactttatcttcaactcacttttagctagaatcagttcacataaaatcaatttttgtcgctgcataaccaa 2778690  T
Q  144 acacac 149  Q
    ||||||    
T  2778691 acacac 2778696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 16972071 - 16972005
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattc 110  Q
    ||||||||||||||||| |||||| |||||| |||| |||||||||||| |||| | ||||||||||    
T  16972071 cttttacatgaatgtattcaaacacaaatcattttaccttcaactcacttttagtctgaatcaattc 16972005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 32927970 - 32928035
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||||||||| ||||||||||  |||||||||| | ||||  ||||||||||    
T  32927970 cttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaatt 32928035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 10368044 - 10368108
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||| |||  || ||||||||    
T  10368044 ttttacatgaatgtatctaaacacaaatcactttaccttcaactcacttttactcaaaatcaatt 10368108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 131
Target Start/End: Original strand, 32767472 - 32767552
Alignment:
Q  49 acatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    |||||||||||||||||||||||||| ||||  | ||||||||| |||  || |||||||||||| ||||| |||| ||||||    
T  32767472 acatgaatgtatccaaacataaatcaatttacatccaactcactttta--cataatcaattcactcaaaattaattcttgtca 32767552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 1373081 - 1373134
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||||||| | |||||||||||| ||| ||| ||||||||    
T  1373081 tgtatccaaacataaatcacttcaacttcaactcacttttatccaaaatcaatt 1373134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 4402953 - 4402873
Alignment:
Q  40 cttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatca 121  Q
    |||||||||||||| ||||||| ||||||||||||||||| | |||||||||| |||   | |||||||||  |||||||||    
T  4402953 cttgcttttacatggatgtatcaaaacataaatcactttaac-tcaactcacttttaagtaaaatcaattctttaaaaatca 4402873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 19649224 - 19649281
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||| |||||||||||||||||||||||  ||||||||||| ||| ||| ||||||||    
T  19649224 tgaaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaatt 19649281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 22552819 - 22552739
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||  |||| |||||||||||||||| |||  | |||||||||| ||| ||| |||||||||| | ||||||||||    
T  22552819 cttttacaataatgcatccaaacataaatcaattttccatcaactcacttttatccaaaatcaattcaattaaaatcaatt 22552739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 32994249 - 32994182
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatc--actttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||||||  ||||||||||||||  | |||| |||||||||||| | ||||||||||||||    
T  32994249 cttttacatgaatgagtccaaacataaatcaaattttaccttcaactcactttcagccagaatcaatt 32994182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 43492244 - 43492209
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcacttta 79  Q
    ||||||||||||||||||||||||||||||| ||||    
T  43492244 cttttacatgaatgtatccaaacataaatcatttta 43492209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 9461545 - 9461481
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||| ||||||||||||||||| |||||||||||| | ||| ||| | |||| |||||||||||    
T  9461545 cttttatatgaatgtatccaaacacaaatcactttagttgcaattca-ttttagtcagaatcaatt 9461481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 24775020 - 24774959
Alignment:
Q  49 acatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattc 110  Q
    ||||||| |||||||||||||||  |||||| || ||||||| | |||||| ||||||||||    
T  24775020 acatgaaagtatccaaacataaactactttacctacaactcaattttagcctgaatcaattc 24774959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 35495068 - 35495133
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||||| |||||||||| |||||||||||  |||||| |||| |||  ||||| |||||    
T  35495068 cttttacatgaatatatccaaacacaaatcactttatattcaacccacttttaatcagaagcaatt 35495133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 38516329 - 38516394
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattc 110  Q
    |||||||| |||  |||||||||||||||||||||  ||||||||||| ||| | | |||||||||    
T  38516329 ttttacataaatacatccaaacataaatcactttacattcaactcactattatcgaaaatcaattc 38516394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 2764476 - 2764432
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaact 88  Q
    ||||||| |||||||||||||| |||||||||||||  |||||||    
T  2764476 cttttacgtgaatgtatccaaatataaatcactttatattcaact 2764432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 4950575 - 4950607
Alignment:
Q  58 tatccaaacataaatcactttagcttcaactca 90  Q
    |||||||||||||||||||||| ||||||||||    
T  4950575 tatccaaacataaatcactttaccttcaactca 4950607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 38335868 - 38335820
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcact 92  Q
    ||||||||||||||||||| |||| |||||| || | ||||||||||||    
T  38335868 cttttacatgaatgtatccgaacacaaatcaattcaccttcaactcact 38335820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 34620964 - 34621041
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatca 121  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||| |  ||||||||||| ||||||| |||||||    
T  34620964 cttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaatca 34621041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 34748401 - 34748478
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatca 121  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||| |  ||||||||||| ||||||| |||||||    
T  34748401 cttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaatca 34748478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 28466981 - 28466908
Alignment:
Q  54 aatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 127  Q
    |||||||||||||||||| |||| || |||||||||| | |||||||||||||||||||| ||||||| |||||    
T  28466981 aatgtatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaatcatttttt 28466908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 34736752 - 34736825
Alignment:
Q  54 aatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 127  Q
    |||||||||||||||||| |||| || |||||||||| | |||||||||||||||||||| ||||||| |||||    
T  34736752 aatgtatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaatcatttttt 34736825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 34026469 - 34026381
Alignment:
Q  67 ataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaaacacacaataaa 155  Q
    |||||| |||||| |||||||||||| |||||||||||||||||||| |||||  ||| |||||| | || ||||||||||||| ||||    
T  34026469 ataaataactttatcttcaactcacttttagccagaatcaattcactcaaaatatattcttgtcacagcaaaaccaaacacacactaaa 34026381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 882764 - 882842
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaa 122  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||||| | ||| | |||||||||||||| ||| ||||    
T  882764 cttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaactagaatcaattcactcaaactcaa 882842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 34911023 - 34911100
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    |||||||||||||  ||||||||||||||||||| | |||||||||||| |||| | ||||||||||||| ||||||||||    
T  34911023 cttttacatgaat--atccaaacataaatcactt-accttcaactcacttttagtcggaatcaattcactcaaaatcaatt 34911100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 3798979 - 3799047
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcact 113  Q
    ||||||||||||||||  |||||||||||| |||| |||||||||||| |||  |||||||||||||||    
T  3798979 ttttacatgaatgtataaaaacataaatcattttatcttcaactcacttttaatcagaatcaattcact 3799047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 19601456 - 19601372
Alignment:
Q  47 ttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    ||||||||||||| ||||| | |||| |||||| |||||||||||| ||||  | |||||||||| | |||||||||||||||||    
T  19601456 ttacatgaatgtaaccaaatacaaattactttatcttcaactcactattagttaaaatcaattcaatcaaaatcaatttttgtca 19601372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 1485170 - 1485070
Alignment:
Q  27 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 126  Q
    ||||||||| || ||  ||||||||| | ||||||||||| |||||||||  |  || |||||||| ||||| |||||||||||| |||||| |||||||    
T  1485170 atttattgttcaactcacttttacataagtgtatccaaacgtaaatcactcaactttaaactcacttttagctagaatcaattcattaaaaaacaatttt 1485071  T
Q  127 t 127  Q
    |    
T  1485070 t 1485070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 34063390 - 34063464
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaa 118  Q
    ||||||||| ||| || ||||||||||||||||||||||||||| || | |||  || |||||||||||| ||||    
T  34063390 cttttacataaatataaccaaacataaatcactttagcttcaacccaattttaatcataatcaattcactcaaaa 34063464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 25195181 - 25195126
Alignment:
Q  46 tttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccaga 102  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||| |||| ||||    
T  25195181 tttacatgaatgtatccaa-cataaaacactttaccttcaactcacttttagacaga 25195126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 7953079 - 7953126
Alignment:
Q  62 caaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||| |||||||||| | || |||||||||||||    
T  7953079 caaacataaatcactttaccttcaactcaattttggccagaatcaatt 7953126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 957629 - 957595
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcacttta 79  Q
    |||||||||||||||||||||||||||||| ||||    
T  957629 ttttacatgaatgtatccaaacataaatcatttta 957595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 4910986 - 4911020
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcacttt 78  Q
    ||||||||| |||||||||||||||||||||||||    
T  4910986 cttttacataaatgtatccaaacataaatcacttt 4911020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 34898810 - 34898859
Alignment:
Q  81 cttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    |||| ||||||| |||||||||||||||||| | |||||||||||||||||    
T  34898810 cttcgactcact-ttagccagaatcaattcaatcaaaatcaatttttgtca 34898859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 35098454 - 35098400
Alignment:
Q  55 atgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||| ||| |||||| |||||||||||| |||| || ||||||||    
T  35098454 atgtatccaaacatgaattactttaccttcaactcacttttagtcaaaatcaatt 35098400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 1499978 - 1500043
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||| ||||||| ||||||||||||| ||||   ||||||| || ||||||| ||||||||    
T  1499978 cttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagccaaaatcaatt 1500043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 3289823 - 3289870
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcact 92  Q
    ||||||||| |||||||||||||| ||||||||||| || |||||||||    
T  3289823 cttttacat-aatgtatccaaacacaaatcactttatctgcaactcact 3289870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 30926786 - 30926698
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcat 132  Q
    ||||| ||||||| ||| ||||||||||||| |||| |||| |||||   || | |||||||||||||||  ||||| |||||| ||||    
T  30926786 cttttgcatgaatatattcaaacataaatcattttaccttctactcaacttttgtcagaatcaattcactccaaatctatttttctcat 30926698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 34250354 - 34250278
Alignment:
Q  51 atgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 127  Q
    |||||||| ||||||||||||||||||||||||||||||| |  ||| || |||||||||||| |||||||||||||    
T  34250354 atgaatgtttccaaacataaatcactttagcttcaactcaattatagtcaaaatcaattcactcaaaatcaattttt 34250278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 15368551 - 15368632
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 126  Q
    |||||||||| |||||| ||||||||||||||||   |||||||||| | | |||||||||||||||||| ||||||||||||    
T  15368551 cttttacatggatgtattcaaacataaatcacttcc-cttcaactcaatttcagccagaatcaattcactcaaaatcaatttt 15368632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 36927694 - 36927611
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaattttt 127  Q
    |||||||| ||||||||||||||||||||||||||| | ||| |||    | || ||||||||||||| | |||||||||||||    
T  36927694 cttttacaggaatgtatccaaacataaatcactttaccatcatctctaattcagtcagaatcaattcagtcaaaatcaattttt 36927611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 22811070 - 22811128
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattc 110  Q
    |||| |||||||||||||||||||||||  ||||||||||| ||| ||| |||||||||    
T  22811070 tgaaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattc 22811128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 4306591 - 4306636
Alignment:
Q  45 ttttacatgaatgtatccaaacataaatcactttagcttcaactca 90  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||    
T  4306591 ttttacatgaatgtatccaaacataaatcattttacattcaactca 4306636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 117503 - 117439
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaat 108  Q
    |||||||||  |||||||||||||| ||||| |||| ||||||||||||  ||| ||||||||||    
T  117503 cttttacatagatgtatccaaacatgaatcattttaccttcaactcacttctagtcagaatcaat 117439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 22482237 - 22482305
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || |  ||||||||||| ||| ||| ||||||||| || ||||||||||    
T  22482237 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 22482305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 18637370 - 18637441
Alignment:
Q  53 gaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    |||| |||||||||| |||||||| ||   |||||||||| ||||  |||||||||||||| ||||||||||    
T  18637370 gaatctatccaaacacaaatcactgtactctcaactcacttttagttagaatcaattcactcaaaatcaatt 18637441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 28973935 - 28973997
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatca 106  Q
    ||||||||| | ||||| |||||||||||||| |||  ||||||||||| || ||||||||||    
T  28973935 cttttacatcagtgtattcaaacataaatcacattatattcaactcacttttggccagaatca 28973997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 14299416 - 14299469
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||| |||||| ||||||||||| |||||||||||| ||| | ||||||||||    
T  14299416 tgtattcaaacacaaatcactttaccttcaactcacttttatctagaatcaatt 14299469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 14671103 - 14671167
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||| |||||||||||||| |||| |  ||||| ||||| ||||||| ||||||||    
T  14671103 cttttacatgaatgcatccaaacataaat-acttcacattcaattcacttttagccataatcaatt 14671167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 19784864 - 19784929
Alignment:
Q  59 atccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||| |||||||  ||||||||||| ||| ||| ||||||||||   ||||||||||    
T  19784864 atccaaacataaaccactttacattcaactcacttttaaccaaaatcaattcaaataaaatcaatt 19784929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 34101857 - 34101906
Alignment:
Q  50 catgaatgtatccaaacataaatcactttagcttcaactcactcttagcc 99  Q
    |||||| || ||||||||||||||||| ||| ||||||||||| ||||||    
T  34101857 catgaacgtttccaaacataaatcactatagattcaactcacttttagcc 34101906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 35139023 - 35138967
Alignment:
Q  51 atgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaa 107  Q
    |||||||||||  ||||||||||| |||| |||||||||| | |||| |||||||||    
T  35139023 atgaatgtatctgaacataaatcattttaccttcaactcaattttagacagaatcaa 35138967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 34915144 - 34915246
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaa 143  Q
    ||||||||||||||||| ||||||||||||| |||| || ||||||||| |||| ||  || |||||||| |||||||||| | |||| | || ||||||    
T  34915144 cttttacatgaatgtattcaaacataaatcattttacctgcaactcacttttagtcattataaattcacttaaaatcaattctagtcaaagcagaaccaa 34915243  T
Q  144 aca 146  Q
    |||    
T  34915244 aca 34915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 18325115 - 18325029
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    |||||||||||||||||||| |||||||||||||||  ||||| | ||| ||||||| ||||| |||| | |||||||| ||||||||    
T  18325115 cttttacatgaatgtatccatacataaatcactttatattcaagtgacttttagccaaaatcagttca-ttaaaatcaacttttgtca 18325029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 5268297 - 5268362
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||||| ||| |||||| |||||||||||  ||||||||||| |||| |||||||||||    
T  5268297 cttttacatgaatatattcaaacaaaaatcactttacattcaactcacttttaggcagaatcaatt 5268362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 15515076 - 15515011
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||||| ||||||| |||||||| ||||| |||||||||||| ||||| ||| ||||||    
T  15515076 cttttacatgaatttatccaatcataaatcgctttaccttcaactcacttttagctagactcaatt 15515011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 47978426 - 47978354
Alignment:
Q  59 atccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    |||||| ||||||||||||||  ||||||||||| ||| ||| |||||||||||| ||||| |||| ||||||    
T  47978426 atccaaccataaatcactttacattcaactcacttttacccaaaatcaattcactcaaaatgaattcttgtca 47978354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 32370042 - 32370003
Alignment:
Q  40 cttgcttttacatgaatgtatccaaacataaatcacttta 79  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  32370042 cttgcttttacatgaatgtatccaaacacaaatcacttta 32370003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 35961446 - 35961501
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagcc 99  Q
    |||||||||||||||||  |||||||||||| |||| |||||||||||| ||||||    
T  35961446 cttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttagcc 35961501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 4347028 - 4347086
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattc 110  Q
    |||| |||||||||||||||||||||||  ||||||||||| ||| ||| |||||||||    
T  4347028 tgaaggtatccaaacataaatcactttacattcaactcacttttaaccaaaatcaattc 4347086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 6932189 - 6932104
Alignment:
Q  46 tttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtca 131  Q
    |||||| ||||| ||||||||  | |||| ||||  ||||||||||| |||| ||||||||||||| | |||||||| ||||||||    
T  6932189 tttacacgaatgaatccaaacgaagatcattttacattcaactcacttttagtcagaatcaattcattcaaaatcaaattttgtca 6932104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 25061285 - 25061354
Alignment:
Q  57 gtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 126  Q
    |||||||||||||||||| ||||  ||||||||||| ||| ||| ||||||||||   ||||||||||||    
T  25061285 gtatccaaacataaatcaatttatgttcaactcacttttaaccaaaatcaattcaaccaaaatcaatttt 25061354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 20800345 - 20800277
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || |  ||||||||||| ||| ||| ||||||||| || ||||||||||    
T  20800345 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 20800277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 27849218 - 27849266
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcact 92  Q
    ||||||||||||||||||| |||| |||||| |||| ||||||||||||    
T  27849218 cttttacatgaatgtatcctaacacaaatcattttaccttcaactcact 27849266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 33693085 - 33693125
Alignment:
Q  49 acatgaatgtatccaaacataaatcactttagcttcaactc 89  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  33693085 acatgaatgtatccaaacataaatcactttacgttcaactc 33693125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 35569270 - 35569202
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || |  ||||||||||| ||| ||| ||||||||| || ||||||||||    
T  35569270 tgtatccaaacataaatcaattcacattcaactcacttttaaccaaaatcaattctctcaaaatcaatt 35569202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 47053505 - 47053569
Alignment:
Q  60 tccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||  |||||||||| || ||||||||| |||| ||||||||||| ||| ||||||||||    
T  47053505 tccaaacaccaatcactttacctccaactcactattagtcagaatcaatttactcaaaatcaatt 47053569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 48635197 - 48635165
Alignment:
Q  46 tttacatgaatgtatccaaacataaatcacttt 78  Q
    |||||||||||||||||||||||||||||||||    
T  48635197 tttacatgaatgtatccaaacataaatcacttt 48635165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Complemental strand, 213288 - 213253
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcacttta 79  Q
    |||||||||| |||||||||||||||||||||||||    
T  213288 cttttacatgcatgtatccaaacataaatcacttta 213253  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 47892391 - 47892337
Alignment:
Q  54 aatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||| | ||||||||    
T  47892391 aatgtatccgaacataaatcactttag-ttcaactcacttttagctaaaatcaatt 47892337  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 48549038 - 48548975
Alignment:
Q  27 atttattgtccagcttgcttttacatgaatgtatccaaacataaatcactttagcttcaactca 90  Q
    ||||||||| || ||  ||||||||| |||||||| |||||||||||| |||| ||||||||||    
T  48549038 atttattgttcaactcacttttacataaatgtatcaaaacataaatcattttaccttcaactca 48548975  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 34571190 - 34571084
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaa 143  Q
    ||||||| | || ||||||||| |||||| |  |||  ||||||||||| |||  |||||||||||   | |||||||||||||||||   |||||||||    
T  34571190 cttttacctaaacgtatccaaatataaatgaacttacattcaactcacttttaatcagaatcaattttatgaaaatcaatttttgtcaccgcataaccaa 34571091  T
Q  144 acacaca 150  Q
    |||||||    
T  34571090 acacaca 34571084  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 5868235 - 5868158
Alignment:
Q  48 tacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcact-aaaaatcaatt 124  Q
    |||||||| ||||||||||| |||| | |||| |||| |||| || |||| || |||||||||||| |||||||||||    
T  5868235 tacatgaacgtatccaaacacaaatgattttaccttcgactcgcttttagtcataatcaattcactcaaaaatcaatt 5868158  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 7524191 - 7524256
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||| ||||| |||||||| ||||||||||| ||| | |||||| ||||  ||||||||||    
T  7524191 cttttacataaatgtgtccaaacacaaatcactttaccttgagctcacttttagttagaatcaatt 7524256  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 13344836 - 13344885
Alignment:
Q  61 ccaaacataaatcactttagcttcaactcactcttagccagaatcaattc 110  Q
    |||||||||||||||||||  ||||||||||| ||| ||| |||||||||    
T  13344836 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattc 13344885  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 15478014 - 15477949
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||| ||| ||||||||||||| ||||||||| | | |||||||||||| || ||||||| |||||    
T  15478014 ctttcacacgaatgtatccaaagataaatcacctaatcttcaactcacttttggccagaaccaatt 15477949  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 34875096 - 34875031
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||| ||||||| |||||||| |||||||||||||   |||||| ||| ||||| ||||||||||    
T  34875096 cttttgcatgaatttatccaaagataaatcactttacaatcaactgacttttagctagaatcaatt 34875031  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 45660612 - 45660548
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    ||||||||||| | ||||||||||||||||||| || ||| |||||||| |||| || ||||||||    
T  45660612 cttttacatgagtttatccaaacataaatcactcta-ctttaactcacttttagtcaaaatcaatt 45660548  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 12119388 - 12119432
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaact 88  Q
    ||||||||||| || |||||||||||||||||||||  |||||||    
T  12119388 cttttacatgattgaatccaaacataaatcactttatattcaact 12119432  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 28287302 - 28287258
Alignment:
Q  82 ttcaactcactcttagccagaatcaattcactaaaaatcaatttt 126  Q
    ||||||||||| ||||| |||||||||||||| ||| ||||||||    
T  28287302 ttcaactcacttttagctagaatcaattcactcaaagtcaatttt 28287258  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 29759710 - 29759762
Alignment:
Q  57 gtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||| ||||  ||||||||||| ||| ||| ||||||||    
T  29759710 gtatccaaacataaatcattttacattcaactcacttttaaccataatcaatt 29759762  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 40352451 - 40352503
Alignment:
Q  58 tatccaaacataaatcactttagcttcaactcactcttagccagaatcaattc 110  Q
    ||||||||||||||||||||||  || |||||||| ||| ||| |||||||||    
T  40352451 tatccaaacataaatcactttacattaaactcacttttaaccaaaatcaattc 40352503  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 40662989 - 40662885
Alignment:
Q  54 aatgtatccaaacataaatcactttagctt-caactcactcttagccagaatcaattcactaaaaatcaatttttgtcatatcataaccaaacacacaat 152  Q
    |||||| ||||||| ||||||||||   || ||||| ||| | || ||||||||||||||| ||||| |||| |||||| | || ||||||||| ||| |    
T  40662989 aatgtacccaaacacaaatcacttttttttgcaactaactataagtcagaatcaattcactcaaaattaattcttgtcaaaacagaaccaaacatacact 40662890  T
Q  153 aaatg 157  Q
    |||||    
T  40662889 aaatg 40662885  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 42850287 - 42850219
Alignment:
Q  56 tgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatt 124  Q
    ||||||||||||||||||| || |  | ||||||||| ||| ||| |||||||||||| ||| ||||||    
T  42850287 tgtatccaaacataaatcaattcacatccaactcacttttaaccaaaatcaattcacttaaactcaatt 42850219  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 43541632 - 43541576
Alignment:
Q  99 cagaatcaattcactaaaaatcaatttttgtcatatcataaccaaacacacaataaa 155  Q
    ||||||||||||| | | |||||||||||||||   |||||||||||||||| ||||    
T  43541632 cagaatcaattcattcagaatcaatttttgtcaccgcataaccaaacacacactaaa 43541576  T

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Target: scaffold0361 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 14121 - 14056
Alignment:
Q  44 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| |  |||| ||||||||||    
T  14121 ctttcacatgaatgtatccaaacataaatcactttaccttcaactcaattgtagcaagaatcaatt 14056  T

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Target: scaffold0172 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 15323 - 15271
Alignment:
Q  57 gtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 109  Q
    |||||||||||||||||||||||  ||||||||||| ||| ||| ||||||||    
T  15323 gtatccaaacataaatcactttatattcaactcacttttaaccaaaatcaatt 15271  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 199440 - 199382
Alignment:
Q  52 tgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaattc 110  Q
    |||| ||| |||||||||||||||||||  ||||||||||| ||| ||| |||||||||    
T  199440 tgaaggtaaccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattc 199382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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