View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_126 (Length: 229)

Name: NF9879_low_126

Description: NF9879

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9879_low_126

[»] chr3 (6 HSPs)

Alignment Details

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 6)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 120; E-Value: 2e-61

Query Start/End: Original strand, 110 - 229

Target Start/End: Complemental strand, 19330459 - 19330340

Alignment:

Q	110	atgtaaggtatgcactctatacagcaacactacaatcacctttctgtgaaatatccccatgagtttcaatggaagaatgttgagatacttccatttctgc	209	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19330459	atgtaaggtatgcactctatacagcaacactacaatcacctttctgtgaaatatccccatgagtttcaatggaagaatgttgagatacttccatttctgc	19330360	T

Q	210	catatcagatgttggtggtt	229	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19330359	catatcagatgttggtggtt	19330340	T

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Target: chr3; HSP #2

Raw Score: 120; E-Value: 2e-61

Query Start/End: Original strand, 110 - 229

Target Start/End: Complemental strand, 19357187 - 19357068

Alignment:

Q	110	atgtaaggtatgcactctatacagcaacactacaatcacctttctgtgaaatatccccatgagtttcaatggaagaatgttgagatacttccatttctgc	209	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19357187	atgtaaggtatgcactctatacagcaacactacaatcacctttctgtgaaatatccccatgagtttcaatggaagaatgttgagatacttccatttctgc	19357088	T

Q	210	catatcagatgttggtggtt	229	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19357087	catatcagatgttggtggtt	19357068	T

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Target: chr3; HSP #3

Raw Score: 110; E-Value: 1e-55

Query Start/End: Original strand, 108 - 229

Target Start/End: Original strand, 18102004 - 18102125

Alignment:

Q	108	taatgtaaggtatgcactctatacagcaacactacaatcacctttctgtgaaatatccccatgagtttcaatggaagaatgttgagatacttccatttct	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	18102004	taatgtaaggtatgcactctatacagcaacactacaatcacctttctgtgaaataaccccatgagtttcaatagaagaatgttgagatacttccatttct	18102103	T

Q	208	gccatatcagatgttggtggtt	229	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	18102104	gccatatcagatggtggtggtt	18102125	T

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Target: chr3; HSP #4

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 58 - 108

Target Start/End: Complemental strand, 19396507 - 19396457

Alignment:

Q	58	ttgtaattatcaattttagtgaacctagataaaggaagtttaggcactttt	108	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|
T	19396507	ttgtaattatcaattttagtgaacctagataaaggaattatatgcactttt	19396457	T

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Target: chr3; HSP #5

Raw Score: 34; E-Value: 0.0000000003

Query Start/End: Original strand, 29 - 94

Target Start/End: Complemental strand, 19360648 - 19360583

Alignment:

Q	29	agagaactgattttagtctcggttacattttgtaattatcaattttagtgaacctagataaaggaa	94	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|
T	19360648	agagaactttttttagtctcatatacattttgtaattatcaattttagtgggcctagatgaaggaa	19360583	T

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Target: chr3; HSP #6

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 39 - 92

Target Start/End: Complemental strand, 19331391 - 19331338

Alignment:

Q	39	ttttagtctcggttacattttgtaattatcaattttagtgaacctagataaagg	92	Q
		\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|
T	19331391	ttttaatcttggttacattttgtaattatcatttttagtgggcatagataaagg	19331338	T

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