View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_127 (Length: 229)
Name: NF9879_low_127
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_127 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 3747270 - 3747047
Alignment:
| Q |
6 |
acttgcatccacaagaaacatgtggaaggctagctaagtcaagtgactggaatattttaagtgtggaatttggatttgttttcgggcttgggattttgat |
105 |
Q |
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| T |
3747270 |
acttgcatccacaagaaacatgtggaaggctagctaagtcaagtgactggaatattttaagtgtggaatttggatttgttttcgggcttgggattttgat |
3747171 |
T |
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| Q |
106 |
tattcccttcatgttttggaagcgatggagggaagactattgcaaacttttggacacaattctctgcaagatttttccttggatgcatgttgaatatgta |
205 |
Q |
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| T |
3747170 |
aattcccttcatgttttggaagcgatggagggaagactattgcaaacttttggacacaattctctgcaagatttttccctggatgcatgttgaatacgta |
3747071 |
T |
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| Q |
206 |
aaccacagaggaaagtcattcact |
229 |
Q |
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| T |
3747070 |
aaccacagaggaaagtcattcact |
3747047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 5856371 - 5856217
Alignment:
| Q |
53 |
tggaatattttaagtgtggaatttggatttgttttcgggcttgggattttgattattcccttcatgttttggaagcgatggagggaagactattgcaaac |
152 |
Q |
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| T |
5856371 |
tggaattttttaagtgtggaactaggatttatttttgggcttggaagtgttattggtcccatcatgttttggaagcaatggagggtaggttattggaaac |
5856272 |
T |
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| Q |
153 |
ttttggacacaattctctgcaagatttttccttggatgcatgttgaatatgtaaa |
207 |
Q |
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| T |
5856271 |
tcatggacaaaattctttgctggatattcccttggatgcattttgaatatgtaaa |
5856217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 5603753 - 5603616
Alignment:
| Q |
24 |
catgtggaaggctagctaagtcaagtgactggaatattttaagtgtggaatttggatttgttttcgggcttgggattttgattattcccttcatgttttg |
123 |
Q |
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| T |
5603753 |
catgtagaaggctagcttgttcaattgactggaattttataagtgtggaattgggattcatttttgggcttggaattgtcatttatcccatcatgttttg |
5603654 |
T |
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| Q |
124 |
gaagcgatggagggaagactattgcaaacttttggaca |
161 |
Q |
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| T |
5603653 |
gaagcattggagggtaaagtattggaaacttgtggaca |
5603616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 5563035 - 5562986
Alignment:
| Q |
44 |
tcaagtgactggaatattttaagtgtggaatttggatttgttttcgggct |
93 |
Q |
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| T |
5563035 |
tcaattgactggaattttttaagtgtggaattgggatttgtttttgggct |
5562986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 5551482 - 5551430
Alignment:
| Q |
44 |
tcaagtgactggaatattttaagtgtggaatttggatttgttttcgggcttgg |
96 |
Q |
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| T |
5551482 |
tcaattgactggaattttttaagtgtggagttgggatttgtttttgggcttgg |
5551430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 253685 - 253743
Alignment:
| Q |
44 |
tcaagtgactggaatattttaagtgtggaatttggatttgttttcgggcttgggatttt |
102 |
Q |
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| T |
253685 |
tcaattgattggaattttttaagtatggaacttggatttgtttttgggcttggaatttt |
253743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 5849945 - 5850023
Alignment:
| Q |
49 |
tgactggaatattttaagtgtggaatttggatttgttttcgggcttgggattttgattattcccttcatgttttggaag |
127 |
Q |
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| T |
5849945 |
tgactggaattttttaagtgtggagttgggatttgtttttgggctcggaattatcatcactcccctcttgttttggaag |
5850023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 5611851 - 5611802
Alignment:
| Q |
44 |
tcaagtgactggaatattttaagtgtggaatttggatttgttttcgggct |
93 |
Q |
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| T |
5611851 |
tcaattgactggaattttttaagtgtggagttgggatttgtttttgggct |
5611802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 1481513 - 1481429
Alignment:
| Q |
6 |
acttgcatccacaagaaacatgtggaaggctagctaagtcaagtgactggaatattttaagtgtggaatttggatttgttttcgg |
90 |
Q |
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| T |
1481513 |
acttggatccacaaccaacatgtagagggctagcttgttcagttgactggaattttctaagtgtggaattaggatttattttcgg |
1481429 |
T |
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