View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_129 (Length: 227)
Name: NF9879_low_129
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_129 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 227
Target Start/End: Original strand, 47990512 - 47990723
Alignment:
| Q |
16 |
gaaattgaattggtacaaatgttgcaaaccctagtagttcccgcaaggtttcgcttcgcaaatcgaatatctctccgtcgaagcttgagcagaattcgtt |
115 |
Q |
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| T |
47990512 |
gaaattgaattggtacaaatgttgcaaaccctagtagttcccgcaaggtttcgcttcgcaaatcgaatatctctccgtcgaagcttgagcagaattcgtt |
47990611 |
T |
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| Q |
116 |
cattcaattccgattatggagatcagtctcgtggtgggctccctcgattctactctgaaattcttcctccttcaaaggcatgcgctcttatctaatatct |
215 |
Q |
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| T |
47990612 |
cattcaattccgattatggagatcagtctcgtggtgggctccctcgattctactctgaaattcttcctccttcaaaggcatgcgctcttatctaatatct |
47990711 |
T |
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| Q |
216 |
cacgaattttac |
227 |
Q |
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|||||||||||| |
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| T |
47990712 |
cacgaattttac |
47990723 |
T |
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