View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_136 (Length: 211)
Name: NF9879_low_136
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_136 |
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Alignment Details
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 37167783 - 37167842
Alignment:
| Q |
14 |
agagagagaaacaaccaaacaaacaagtcaatagagagaaaagtaaccagacagaagagg |
73 |
Q |
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| T |
37167783 |
agagagagaaacaaccaaacaagcaagtcaatagagagaaaagtaaccagacagaagagg |
37167842 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 37167929 - 37167963
Alignment:
| Q |
161 |
agtcatatcaatcgatcataattgagagaggaatc |
195 |
Q |
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| T |
37167929 |
agtcatatcaatcgatcataatagagagaggaatc |
37167963 |
T |
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