View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_138 (Length: 205)
Name: NF9879_low_138
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_138 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 45094 - 44920
Alignment:
| Q |
14 |
cagagagataatgaagaagataacaagcagctgcagatgctatcaattggtcaatccaatataggatcgaacgaacgatagtgatgtggcctccgacaag |
113 |
Q |
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| T |
45094 |
cagagagataatgaagaagataacaagcagctgcagatgctatcaattggtcaatccaatataggatcgaacgaacgatagtgatgtggcctccgacaag |
44995 |
T |
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| Q |
114 |
gaggcccaaagtcacggcgggattcaaatggccaccggaaatatgagcagcagagatcattacagcccccacaag |
188 |
Q |
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| T |
44994 |
gaggcccaaagtcacggcgggattcaaatggccaccggaaatatgagcagcagagatcattacagccaccacaag |
44920 |
T |
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Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 47161 - 47007
Alignment:
| Q |
22 |
taatgaagaagataacaagcagctgcagatgctatcaattggtcaatccaatataggatcgaacgaacgatagtgatgtggcctccgacaaggaggccca |
121 |
Q |
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| T |
47161 |
taatgaagaagatagcaagctcctgcagatgctataagttgatcaatccaatataagatagaacggacgacggtgatgtggccgccaacaaggaggccga |
47062 |
T |
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| Q |
122 |
aagtcacggcgggattcaaatggccaccggaaatatgagcagcagagatcattac |
176 |
Q |
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| T |
47061 |
aggtcacagcgggattcaaatggccaccggaaacgtgaccggcagatatcattac |
47007 |
T |
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