View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_140 (Length: 204)
Name: NF9879_low_140
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_140 |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 48883874 - 48883951
Alignment:
| Q |
105 |
tatttggaacatcacttcttttgaagaaagtacggaacctgggacatgagtttgaggaaattacagtttggaacaacc |
182 |
Q |
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| T |
48883874 |
tatttgcaacatcacttcttttgaagaaagtacggaacttgggacatgagtttgaggaaattacagtttggaacaacc |
48883951 |
T |
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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 48883840 - 48883878
Alignment:
| Q |
14 |
cataggtattttataaaaatattagtatgatcattattt |
52 |
Q |
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| T |
48883840 |
cataggtattttataaaaatattagtatgatcattattt |
48883878 |
T |
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