View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_143 (Length: 204)
Name: NF9879_low_143
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_143 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 42399887 - 42400062
Alignment:
| Q |
14 |
gcagagaaatttcaaaaggacaatgaattatggaaggacagaatgtcacattacaagcatatcactcctattgctcaaggaagatatagaaacattattg |
113 |
Q |
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| T |
42399887 |
gcagagaaatttcaaaaggacaatgaattatggaaggacagaatgtcacattacaagcatatcactcctattgctcaaggaagatatagaaacattattg |
42399986 |
T |
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| Q |
114 |
atatgaatgcttaccttggtggatttgcagcagcattattaaaatttccagtttgggttatgaatgttgttccttc |
189 |
Q |
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| T |
42399987 |
atatgaatgcttaccttggtggatttgcagcagcattattaaaatttccagtttgggttatgaatgttgttccttc |
42400062 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 503714 - 503625
Alignment:
| Q |
97 |
atatagaaacattattgatatgaatgcttaccttggtggatttgcagcagcattattaaaatttccagtttgggttatgaatgttgttcc |
186 |
Q |
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| T |
503714 |
atatagaaatgttatggatatgaatgctggctttggtggatttgcagctgcattggtgaaatatccagtttgggttatgaatgttgttcc |
503625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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