View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_15 (Length: 488)
Name: NF9879_low_15
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_15 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 241 - 475
Target Start/End: Original strand, 42471130 - 42471357
Alignment:
| Q |
241 |
atacatgtctgttgagcctggaacaaataggacacatgtgttgtattcatctttgaaaaagtatgcttcgttgattttgtgagaggcaaaagctgcatcc |
340 |
Q |
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| T |
42471130 |
atacatgtctgttgagcctggaacaaataggacacatgtgttgtattcatctt-------gtatgcttcattgatcttgtgagaggaaaaagctgcatcc |
42471222 |
T |
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| Q |
341 |
aatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattggttccataatctatacgagcat |
440 |
Q |
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| T |
42471223 |
aatccattttcaaagacagtgccatggaaacaagtaaacccatcgctgatgttctcgatactttgaacgagactattggttccataatctatacgagcat |
42471322 |
T |
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| Q |
441 |
acttgtctcctttgaataagtaagcttctttgtct |
475 |
Q |
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| T |
42471323 |
acttgtctcctttgaataagtaagcttctttgtct |
42471357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 42468218 - 42468438
Alignment:
| Q |
20 |
tcaatatgtagctagcttacgtaattaacaacagaagccaacaattactagatatgtggaaaacaacaaagagtcacacttttattacatcaatttttat |
119 |
Q |
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| T |
42468218 |
tcaatatgtagctagcttacataattaacaacagaagccaacaatta-------tgtggaaaacaacaaggagtcacacttttattacatcaatttttat |
42468310 |
T |
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| Q |
120 |
tctt-aagtatcacagtactggcagcattatgacgattagacagtcataccagtcacggttaattctgttcaggtattattccccgaagagatttccaat |
218 |
Q |
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| T |
42468311 |
tctttaagtatcacagtactggcagcattatgacgattacacagtcataccagtcacggttaattctgttcaggtattattccccaaagagatttccaat |
42468410 |
T |
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| Q |
219 |
tgtcaagagtttgagtcacaggatacat |
246 |
Q |
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| T |
42468411 |
tgtcaagagttcgagtcacaagatacat |
42468438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 291 - 472
Target Start/End: Complemental strand, 3352608 - 3352427
Alignment:
| Q |
291 |
ctttgaaaaagtatgcttcgttgattttgtgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaat |
390 |
Q |
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| T |
3352608 |
ctttgaaaaagtaggcttcattagtcttatgagaagcaaaagctgcatcaattccattttcaaagattgtgccacggaaacacataaacccgtcgataat |
3352509 |
T |
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| Q |
391 |
gttctcgatactttgaacgagactattggttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
472 |
Q |
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| T |
3352508 |
gttcttgatactttgaaccagacggttggttccataatctatacgagcatacttgtctcctttgaataagtaaacttatttg |
3352427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 42046115 - 42046167
Alignment:
| Q |
420 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
472 |
Q |
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| T |
42046115 |
ttccatagtctatacgagcatattggtctcctttaaataagtaagcttctttg |
42046167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 320 - 473
Target Start/End: Original strand, 63205 - 63358
Alignment:
| Q |
320 |
tgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattgg |
419 |
Q |
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| T |
63205 |
tgagaagcaaaagccgcatcgattcccttttcaaagatcgtgtctcggaaacaagtaaacccgctgttgatgtccctgataatttgaacaagactgttcg |
63304 |
T |
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| Q |
420 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttgt |
473 |
Q |
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| T |
63305 |
tgccatagtctatacgagcatacttgtctcctctgaacaagtaaacctctttgt |
63358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 473
Target Start/End: Original strand, 37149 - 37302
Alignment:
| Q |
320 |
tgagaggcaaaagctgcatccaatccattttcaaagacagtgccacggaaacaagtaaacccatcgctaatgttctcgatactttgaacgagactattgg |
419 |
Q |
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| T |
37149 |
tgagaagcaaaagccgcatcgattcccttttcaaagatcgtgtctcggaaacaagtaaacccgctgttgatgtccctgataatttgaacaagactgttcg |
37248 |
T |
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| Q |
420 |
ttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttgt |
473 |
Q |
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| T |
37249 |
tgccatagtctatacgagcatacttatctcctctgaacaagtaaacctctttgt |
37302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 14452764 - 14452708
Alignment:
| Q |
416 |
ttggttccataatctatacgagcatacttgtctcctttgaataagtaagcttctttg |
472 |
Q |
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| T |
14452764 |
ttggtgccatagtctatacgagcatacttgtctcctttgaataagtgaacttctttg |
14452708 |
T |
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