View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_16 (Length: 481)

Name: NF9879_low_16
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_16
NF9879_low_16
[»] chr2 (7 HSPs)
chr2 (301-471)||(27645001-27645166)
chr2 (78-239)||(27645227-27645389)
chr2 (386-471)||(27549549-27549634)
chr2 (78-150)||(27645499-27645572)
chr2 (78-146)||(27554426-27554495)
chr2 (78-145)||(27554734-27554802)
chr2 (78-146)||(27554582-27554651)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 301 - 471
Target Start/End: Complemental strand, 27645166 - 27645001
Alignment:
Q  301 acccatcctaattttgttcatcaatttaggggtttaaaatcttctctgttaaggaagagaagagacaccgcgtggcccgttcctttttggtctataaata 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  27645166 acccatcctaattttgttcatcaatttaggggtttaaaatcttctctgttaaggaagaga-----caccgcgtggcccgttcctttttggtctataaata 27645072  T
Q  401 caaaccttcttcactccaaaatctcattaacccttttcttctcaatcgctattcctctttctttctctctg 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27645071 caaaccttcttcactccaaaatctcattaacccttttcttctcaatcgctattcctctttctttctctctg 27645001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 27645389 - 27645227
Alignment:
Q  78 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatgaaaatcnnnnnnnnaaaggaatatcttaaggg 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||        |||| ||||| |||||||    
T  27645389 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgtatatggtaatttttcattcaataaaaatcttttttttaaagaaatattttaaggg 27645290  T
Q  177 gtaagaattcacacgcaaaaaatatttttggaccaaattttggattaaccacagataaactga 239  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  27645289 gtaagaattcacacgcaaaaaatatttttgaaccgaattttgaattaaccacagataaactga 27645227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 386 - 471
Target Start/End: Complemental strand, 27549634 - 27549549
Alignment:
Q  386 tttggtctataaatacaaaccttcttcactccaaaatctcattaacccttttcttctcaatcgctattcctctttctttctctctg 471  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27549634 tttggtctataaagacaaaccttcttcaccccaaaatctcattaacccttttcttctcaatcgctattcctctttctttctctctg 27549549  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 27645572 - 27645499
Alignment:
Q  78 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatgaaaatc 150  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||| ||||||||||||||||||||||||||||    
T  27645572 cttttcctcctttgaacaaaatcatacaaaaggtattcgaaatgtatatggtaatttttcatttaatgaaaatc 27645499  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 27554426 - 27554495
Alignment:
Q  78 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatgaa 146  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||| |||| |||||||||||||||||||    
T  27554426 cttttcctcctttgaacaaaatcatacaaaaggtattccaaatgtatatgttaatttttcatttaatgaa 27554495  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 27554734 - 27554802
Alignment:
Q  78 cttttcctcctttgaacaaaatcatacgaaaggtattcataatgt-tatggtaatttttcatttaatga 145  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||| |||| |||||||| |||||||||    
T  27554734 cttttcctcctttgaacaaaatcatacaaaaagtattcgtaatgtatatgataattttttatttaatga 27554802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 27554582 - 27554651
Alignment:
Q  78 cttttcctcctttgaacaaaatcatacgaaaggtattcataat-gttatggtaatttttcatttaatgaa 146  Q
    ||||||||||||| ||||||||||||| ||||||||||  |||   |||| |||||||||||||||||||    
T  27554582 cttttcctcctttaaacaaaatcatacaaaaggtattcgaaataaatatgataatttttcatttaatgaa 27554651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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