View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_17 (Length: 461)

Name: NF9879_low_17
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_17
NF9879_low_17
[»] chr5 (5 HSPs)
chr5 (148-409)||(30517979-30518245)
chr5 (148-409)||(30558319-30558585)
chr5 (9-50)||(30517839-30517880)
chr5 (9-50)||(30558179-30558220)
chr5 (178-211)||(37993619-37993652)
[»] chr1 (2 HSPs)
chr1 (178-216)||(15873799-15873837)
chr1 (178-211)||(9922203-9922236)
[»] chr3 (2 HSPs)
chr3 (178-211)||(54258449-54258482)
chr3 (178-210)||(53506227-53506259)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 148 - 409
Target Start/End: Original strand, 30517979 - 30518245
Alignment:
Q  148 aaagacattttaagaataacattgttaaataaa-----actaacataacaatttacatactaacatttggtattttnnnnnnntattaaataaaaataat 242  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||| |||| |||| |||||||||        |||||| ||||||||||    
T  30517979 aaagacattttaagaataacattgttaaataaagtaaaactaacataacaatttatataccaacaattggtattt-aaaaaaatattaagtaaaaataat 30518077  T
Q  243 tagtcttcaacctttttcagatgtaattttattttggcaatttctttttccacactactttattctcacgcatcc-actgaattctgaaaatacctccat 341  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |    
T  30518078 tagttttcaacctttttcagatgtaattttattttagcaatttctttttccacactactttattatcacgcgtcctactgaattctgaaaatacctccgt 30518177  T
Q  342 tcggattatacagtctgaatgactttttgaaagttttcatataataatatttgaaacctctaaaaatc 409  Q
    |||||||||| ||||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||    
T  30518178 tcggattatatagtctgaatgattttttgaaggttttcatattataaaatttgaaacctctaaaaatc 30518245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 148 - 409
Target Start/End: Original strand, 30558319 - 30558585
Alignment:
Q  148 aaagacattttaagaataacattgttaaataaa-----actaacataacaatttacatactaacatttggtattttnnnnnnntattaaataaaaataat 242  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||| |||| |||| |||||||||        |||||| ||||||||||    
T  30558319 aaagacattttaagaataacattgttaaataaagtaaaactaacataacaatttatataccaacaattggtattt-aaaaaaatattaagtaaaaataat 30558417  T
Q  243 tagtcttcaacctttttcagatgtaattttattttggcaatttctttttccacactactttattctcacgcatcc-actgaattctgaaaatacctccat 341  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |    
T  30558418 tagttttcaacctttttcagatgtaattttattttagcaatttctttttccacactactttattatcacgcgtcctactgaattctgaaaatacctccgt 30558517  T
Q  342 tcggattatacagtctgaatgactttttgaaagttttcatataataatatttgaaacctctaaaaatc 409  Q
    |||||||||| ||||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||    
T  30558518 tcggattatatagtctgaatgattttttgaaggttttcatattataaaatttgaaacctctaaaaatc 30558585  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 30517839 - 30517880
Alignment:
Q  9 aagcatagaccaaaagtagcaatgtaaaacttttggagaacc 50  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  30517839 aagcagagaccaaaagtagcaatgtaaaacttttggagaacc 30517880  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 30558179 - 30558220
Alignment:
Q  9 aagcatagaccaaaagtagcaatgtaaaacttttggagaacc 50  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  30558179 aagcagagaccaaaagtagcaatgtaaaacttttggagaacc 30558220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 37993619 - 37993652
Alignment:
Q  178 aaaactaacataacaatttacatactaacatttg 211  Q
    |||||||||||||||||| |||||||||||||||    
T  37993619 aaaactaacataacaattaacatactaacatttg 37993652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 15873799 - 15873837
Alignment:
Q  178 aaaactaacataacaatttacatactaacatttggtatt 216  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  15873799 aaaactaacataacaattaacatactaacatttgttatt 15873837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 9922203 - 9922236
Alignment:
Q  178 aaaactaacataacaatttacatactaacatttg 211  Q
    |||||||||||||||||| |||||||||||||||    
T  9922203 aaaactaacataacaattaacatactaacatttg 9922236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 54258449 - 54258482
Alignment:
Q  178 aaaactaacataacaatttacatactaacatttg 211  Q
    |||||||||||||||||| |||||||||||||||    
T  54258449 aaaactaacataacaattaacatactaacatttg 54258482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 53506227 - 53506259
Alignment:
Q  178 aaaactaacataacaatttacatactaacattt 210  Q
    |||||||||||||||||| ||||||||||||||    
T  53506227 aaaactaacataacaattaacatactaacattt 53506259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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