View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_18 (Length: 461)
Name: NF9879_low_18
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 34202263 - 34202101
Alignment:
| Q |
19 |
aaagtgatggcccaaaaactcatcacataatcaaactataagctnnnnnnnnnnnnntgttaaatggtgaacaataaaacctagcacattcaagccaaat |
118 |
Q |
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| T |
34202263 |
aaagtgatggcccaaaaactcatcacataatcaaactataagctaaaaaagaaaaaatgttaaatggtgaacaataaaacctagcacattcaagccaaat |
34202164 |
T |
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| Q |
119 |
caacctcaccaatccatcactctcttacttcaatgcatcaacattatttagattttccttttc |
181 |
Q |
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| T |
34202163 |
caacctcaccaatccatcactctcttacttcaatgcatcaacattatttagattttccttttc |
34202101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 34201980 - 34201932
Alignment:
| Q |
299 |
tcattcttgtttttctctttctcattctccatttagctacaacaaaagc |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34201980 |
tcattcttgtttttctctttctcattctccatttagctacaacaaaagc |
34201932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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