View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9879_low_19 (Length: 459)
Name: NF9879_low_19
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 34320310 - 34320746
Alignment:
| Q |
11 |
cacagataaaatattgaaccctttgtttcccgacgaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34320310 |
cacagataaaatattgaaccctttgtttcccgacaaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgca |
34320409 |
T |
|
| Q |
111 |
tgtggaggcatggcgataagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaaat |
210 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34320410 |
tgtggaggaatggcgataagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaaat |
34320509 |
T |
|
| Q |
211 |
tacaagaagaagaagaagataaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagggatttaactattttccc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34320510 |
tacaagaagaagaagaagataaagggttattagtattaccttttcctttacttgatggaggagcttctgtttttccacaaagggatttaactattttccc |
34320609 |
T |
|
| Q |
311 |
agaacttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatagcaacttctagttct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34320610 |
agaacttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatggcaacttctagttct |
34320709 |
T |
|
| Q |
411 |
atgcattcacctccatcacgtgtacaagcagtaactg |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34320710 |
atgcattcacctccatcacgtgtacaagcagtaactg |
34320746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 418
Target Start/End: Original strand, 34329231 - 34329628
Alignment:
| Q |
24 |
ttgaaccctttgtttcccgacgaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgcatgtggaggcatgg |
123 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||| ||||||||||| || ||||| ||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
34329231 |
ttgaaccctttgttcccggatgaattgcaatggaaagaaatggattggagtgaaactttaatagccattcaaatcaactgttttgcatgtggaggaatgg |
34329330 |
T |
|
| Q |
124 |
cgataagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaaattac---aagaaga |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||| |||||| |||| |||| ||||| | |
|
|
| T |
34329331 |
cgataagtgtttgcatgagtcacaaaattggtgatggttcgacacttttcaacttcatgaatgattggtccattatcaacgaaaatttaccaaaagaaaa |
34329430 |
T |
|
| Q |
221 |
agaagaagataaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagggatttaactattttcccagaacttgtg |
320 |
Q |
| |
|
||||| ||| ||||||||||||| |||||| |||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||| | ||||||||| |
|
|
| T |
34329431 |
agaaggagaaaaagggttattagaattaccctttcatttccttgatggaggagcttcaatgtttccacaaagagatttacctatttttcaagaacttgtt |
34329530 |
T |
|
| Q |
321 |
ttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatagcaacttctagttctatgcattc |
418 |
Q |
| |
|
| | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
34329531 |
cttaagagagaaaacaatgtggtgtgtaaaagatttgtgtttcaaccctcaatgatcaagtcccttaagaaaatggcaacttctagttcggtgcattc |
34329628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 8e-59; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 24 - 418
Target Start/End: Complemental strand, 36627727 - 36627339
Alignment:
| Q |
24 |
ttgaaccctttgtttcccgacgaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgcatgtggaggcatgg |
123 |
Q |
| |
|
|||||||||||||| || || ||||| ||||||||||| ||||||||||| | | ||| ||||| ||||||| || || || |||||||||| |||| |
|
|
| T |
36627727 |
ttgaaccctttgttccctgatgaattacaatggaaagaaatggattggagagcaagttttatagccattcaaataaattggtttacatgtggaggaatgg |
36627628 |
T |
|
| Q |
124 |
cgataagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaaattacaagaagaaga |
223 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||| | ||| || |
|
|
| T |
36627627 |
taataagtatttgcatgactcacaaaattggtgatgcttcaaccattttcaaattcatgaatgattgggccattatcaaccaaaagat------agagga |
36627534 |
T |
|
| Q |
224 |
agaagataaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagggatttaactattttcccagaacttgtgtta |
323 |
Q |
| |
|
||| | |||| ||||||||||| ||| || ||||||||||| ||| || | ||||||||||||||||||| |||| ||||||||| | ||| || |
|
|
| T |
36627533 |
agataaaaaagagttattagtatcacccttgagtttacttgatgcaggggcaacaatttttccacaaagggatttgcctatcttcccagaaatggtgata |
36627434 |
T |
|
| Q |
324 |
acgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatagcaacttctagttctatgcattc |
418 |
Q |
| |
|
| || | |||||||||| || | |||||||||||| |||||||| ||||||| ||||| ||||||||||| | ||||||||||| |||||||| |
|
|
| T |
36627433 |
aagaaagaaaacaatgtcgtatttaaaaggtttgtttttcaacctgcaatgattaagtctcttaaggcaatggtgacttctagttccatgcattc |
36627339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 24 - 418
Target Start/End: Complemental strand, 36633294 - 36632911
Alignment:
| Q |
24 |
ttgaaccctttgtttcccgacgaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgcatgtggaggcatgg |
123 |
Q |
| |
|
|||||||||||||| || || ||||| ||||||||||||||||||||||| | | ||| ||||| ||||||| ||||| || ||||||||||| |||| |
|
|
| T |
36633294 |
ttgaaccctttgttccctgatgaattacaatggaaagacatggattggagtgcaagttttatagccattcaaataaactgctttgcatgtggaggaatgg |
36633195 |
T |
|
| Q |
124 |
cgataagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaaattacaagaagaaga |
223 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||| ||| ||||| | |
|
|
| T |
36633194 |
ctataagtatttgcatgagtcacaaaattggtgatgcttcaaccgttttcaacttcatgaatgattgggccactatcaaccaa-----acaggaagatgg |
36633100 |
T |
|
| Q |
224 |
agaagataaagggttattagtattaccttttcctttacttgatggaggagcttcggtttttccacaaagggatttaactattttcccagaacttgtgtta |
323 |
Q |
| |
|
| |||| ||||||||||| ||| || ||||||||||| |||||| ||||||||||||||||||| || |||||||||| ||| | | |
|
|
| T |
36633099 |
a------aaagagttattagtatcacccttaagtttacttgatgcaggagcaataatttttccacaaagggatttgcctgttttcccagagattgcggga |
36633006 |
T |
|
| Q |
324 |
acgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaagtcccttaaggcaatagcaacttctagttctatgcattc |
418 |
Q |
| |
|
| |||| |||||||||| || | |||||||||| | |||||||| |||||||||| || ||||||||||| | ||||||||||| |||||||| |
|
|
| T |
36633005 |
aagagagaaaacaatgtcgtatttaaaaggtttttttttcaacctgcaatgatcaaatctcttaaggcaatggtaacttctagtttcatgcattc |
36632911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 36622487 - 36622306
Alignment:
| Q |
27 |
aaccctttgtttcccgacgaattgcaatggaaagacatggattggagcgatactttgatagctgttcaaatcaactgtttcgcatgtggaggcatggcga |
126 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||| ||||||||||| | | ||| ||||| ||||| | || || || ||||| ||||| |||| | |
|
|
| T |
36622487 |
aaccctttgttccctgatgaattacaatggaaagaaatggattggagagcgagttttatagccattcaagtaaattggtttgcatgcggaggaatggtaa |
36622388 |
T |
|
| Q |
127 |
taagtatttgcatgagtcacaaaattggtgatgcgtcaaccattttcaacttcatgaatgattggtccatcatcaaccaaaa |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
36622387 |
taagtatttgcattagtcacaaaattggtgatgctgcaaccattttcaacttcatgaatgattgggccattatctaccaaaa |
36622306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 280 - 414
Target Start/End: Complemental strand, 36622252 - 36622118
Alignment:
| Q |
280 |
tttttccacaaagggatttaactattttcccagaacttgtgttaacgagaaaaaacaatgtggtgtgtaaaaggtttgtgtttcaaccctcaatgatcaa |
379 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||| | || |||||||||||| |||||||| | |||||||| |
|
|
| T |
36622252 |
tttttccacaaagggatttacctattttcccagaaaatgtgttaaagagagaaaacaatgttgagtttaaaaggtttgtttttcaacctgcgatgatcaa |
36622153 |
T |
|
| Q |
380 |
gtcccttaaggcaatagcaacttctagttctatgc |
414 |
Q |
| |
|
||| ||||||||||| | |||||||||||| |||| |
|
|
| T |
36622152 |
gtctcttaaggcaatggtaacttctagttccatgc |
36622118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University