View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_21 (Length: 455)
Name: NF9879_low_21
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 10054670 - 10055104
Alignment:
| Q |
19 |
taatggacatcttgaaggtccttttttacttaatctttcctgttgtatacgccttaaacgattgccctttttctttgtgtggcaacaatagtttcctaat |
118 |
Q |
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| T |
10054670 |
taatggacatcttgaaggtccttttttacttaatctttcctgttgtatacgccttaaacgattgccctttttctttgtgtggcaacaatagtttcctaat |
10054769 |
T |
|
| Q |
119 |
tcgtttcccctttcaattaggtgagcaatatcctttttgtggctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttcct |
218 |
Q |
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| T |
10054770 |
tcgtttcccctttcaattaggtgagcaatatccttattgtgtctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttcct |
10054869 |
T |
|
| Q |
219 |
tactctgaagaattctacgtacgcagcataaactatctcacacaacagatacaactctacgatcccgatgattgtcttccaaaacgtcttctaagcctca |
318 |
Q |
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| T |
10054870 |
tactctgaagaattctacgtacgcagcataaactatctcacacaacagatacaactctacgatcccgatgattgtcttccaaaacgtcttctaagactca |
10054969 |
T |
|
| Q |
319 |
atttttcaaattctcctttcattgcttcttttagtcgtgactacacattcttaggctgttcatctcagaatattgggtcacaattcattcccattgattg |
418 |
Q |
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| T |
10054970 |
atttttcaaattctcctttcattgcttcttttagtcgtgactacacattcttaggctgttcatctcagaatattgggtcacaattcattcccattgattg |
10055069 |
T |
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| Q |
419 |
tcttagtaattcaacatattttgtatcagccattc |
453 |
Q |
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| T |
10055070 |
tcttagtaattcaacatattttgtatcagccattc |
10055104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 48473225 - 48473142
Alignment:
| Q |
137 |
aggtgagcaatatcctttttgtggctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttcctta |
220 |
Q |
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| T |
48473225 |
aggtgatcaacatccttagtgtagctatcctggtttcaaattaagttgtactgatgatagcaaaacggttctaacacttcctta |
48473142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 319
Target Start/End: Complemental strand, 48475841 - 48475671
Alignment:
| Q |
149 |
tcctttttgtggctatcctggtttcaacttaagttgtaccaatgatagcaaaacaattctaaaacttccttactctgaagaattctacgtacgcagcata |
248 |
Q |
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||||| ||||||||||||||||||||| || |||||| |||||| ||||||| |||||| ||||||||| || | || ||||| || |||| || |
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| T |
48475841 |
tccttattgtggctatcctggtttcaaattgtcttgtactaatgatggcaaaactgttctaacacttccttattcaggagtgttctatgttcgcaaaatc |
48475742 |
T |
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| Q |
249 |
aactatctcacacaacagatacaactctacgatcccgatgattgtcttccaaaacgtcttctaagcctcaa |
319 |
Q |
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||||||||| ||| || |||||| |||| || || || ||| |||||||| ||||||||||| ||||| |
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| T |
48475741 |
aactatctcgaacaccacatacaagtctatgaccctcatcgttgccttccaaatcgtcttctaagtctcaa |
48475671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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