View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_22 (Length: 454)
Name: NF9879_low_22
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 59 - 444
Target Start/End: Original strand, 37861591 - 37861977
Alignment:
| Q |
59 |
tagaagcatagggacacattacttggacgcccttgtcaaccatcttcaaaccagtttgagaattagattaaacctttttaatgaatagatccatattcat |
158 |
Q |
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| T |
37861591 |
tagaagcatagggacacattacttggacgcccttgtcaaccatcttcaaaccagtttgagaattagattaaacctttttaatgaatagatccatattcat |
37861690 |
T |
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| Q |
159 |
gaatgctaaaaatctctcaaacctattggaacaagtcataaatatttccttgtgctctaggacatccattattttgtaaatctctcacaagcattaatgt |
258 |
Q |
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| T |
37861691 |
gaatgctaaaaatctctcaaacctattggaacaagtcataaatatttccttgtgctctaggacatccattattttgtaaatctctcacaagcattaatgt |
37861790 |
T |
|
| Q |
259 |
ttttctacaatgctgtagcgattaatggtaaaaatcgccacatttgtgcattcatcgatacagaatttccaca-ttgagtattcttggacttttgtagtg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
37861791 |
ttttctacaatgctgtagcgattaatggtaaaaatcaccacatttgtgcattcatcgatacagaatttccacatttgagtattcttggacttttttagtg |
37861890 |
T |
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| Q |
358 |
accatagtttctaaatgaacatgttaactcttcaaatgtttcaactgttccatatttagttcaaaattcaactaaagttctcctatg |
444 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37861891 |
accatagtttctaaataaacatgttaactcttcaaatgtttcaactgttccatatttagttcaaaattcaactaaagttctcttatg |
37861977 |
T |
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