View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_23 (Length: 447)
Name: NF9879_low_23
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 32031863 - 32032277
Alignment:
| Q |
20 |
aatatttggttggagtaataaatgtaatgctaagcctttaggaggagtatgcaaagcaagtgaatttcattactacaaaattgaaggagttgagcactac |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32031863 |
aatatttggttggagtaataaatgtaatgctaagcctttaggaggagtatgcaaagcaagtgaatttcattactacaaaattgaaggagttgagcactac |
32031962 |
T |
|
| Q |
120 |
atgagcaaatacactactggtgatagtgtaagtgaagatgcatgtggaaacaaatgtaccaaggattgtaagtgtgttgggtatttctaccacaaggata |
219 |
Q |
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| T |
32031963 |
atgagcaaatacactactggtgatagtgtaagtgaagatgcatgtggaaacaaatgtaccaaggattgtaagtgtgttgggtatttctaccacaaggata |
32032062 |
T |
|
| Q |
220 |
actcaaggtgttggaaagcttatgatcttcaaacccttactaaagtagaaaatactacacacgtgggttttattaaggttcctaataagtagtaagataa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32032063 |
actcaaggtgttggaaagcttatgatcttcaaacccttactaaagtagaaaatactacacacgtgggttttattaaggttcctaataagtagtaagataa |
32032162 |
T |
|
| Q |
320 |
gcttagatttctctttgggaaggtcttggtattgtattttaattgtatcaatttaatatagttatttcctactagtggttttagattgcaataaagttgt |
419 |
Q |
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| T |
32032163 |
gcttagatttctctttgggaaggtcttggtattgtattttaattgtatcaatttaatatagttatttcctactagtggttttagattgcaataaagttgt |
32032262 |
T |
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| Q |
420 |
cgttatctctctgct |
434 |
Q |
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| T |
32032263 |
cgttatctctctgct |
32032277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 20 - 419
Target Start/End: Original strand, 32065003 - 32065423
Alignment:
| Q |
20 |
aatatttggttggagtaataaatgtaatgctaagcctttaggaggagtatgcaaagcaagtgaatttcattactacaaaattgaaggagttgagcactac |
119 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32065003 |
aatatttggttggagtaataagtgtagccctaagcctttaggaggagtatgcaaagcaagtgaatttcattactacaaaattgaaggagttgagcattac |
32065102 |
T |
|
| Q |
120 |
atgagcaaatacactactggtgatagtgtaagtgaagatgcatgtggaaacaaatgtaccaaggattgtaagtgtgttgggtatttctaccacaaggata |
219 |
Q |
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|||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
32065103 |
atgaacaaatacactagtggtgatatagtaagtgaagatgcatgtggaaacaaatgtaccaatgattgtaagtgtgttgggtatttctaccataaggatg |
32065202 |
T |
|
| Q |
220 |
actcaaggtgttggaaagcttatgatcttcaaacccttactaaagtagaaaatactacacacgtgggttttattaaggttcctaataagtagtaagataa |
319 |
Q |
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| T |
32065203 |
aatcaaggtgttggatagcttatgatcttcaaactcttactagagttcaaaataccacacatgtgggttatattaaggtgcctaataagtaataagataa |
32065302 |
T |
|
| Q |
320 |
gcttagatttctctttgggaaggtc---------------------ttggtattgtattttaattgtatcaatttaatatagttatttcctactagtggt |
398 |
Q |
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|||||||||| || |||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| || |
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| T |
32065303 |
gcttagatttttccatgggaaggtcttggtatttttttttttttttttggtattgtattttaattgtatcaatttaattttgttatttcctactagttgt |
32065402 |
T |
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| Q |
399 |
tttagattgcaataaagttgt |
419 |
Q |
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|||||| |||||||||||||| |
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| T |
32065403 |
tttagaatgcaataaagttgt |
32065423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 32072371 - 32072458
Alignment:
| Q |
65 |
agtatgcaaagcaagtgaatttcattactacaaaattgaaggagttgagcactacatgagcaaatacactactggtgatagtgtaagt |
152 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||| |
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| T |
32072371 |
agtatgcaaagcaagtgagtttcattactacaaaattgaaggagttgagcattatatgagcaaatacactgttggtgatagagtaagt |
32072458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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