View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9879_low_24 (Length: 438)
Name: NF9879_low_24
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 39864062 - 39863643
Alignment:
| Q |
1 |
aaacaaaaacagtttagccgaagaaacaaatgttgataaaaatgaagctcaacagtcaaaagtggacgtagagaccactaatgatgaaggtaccagcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39864062 |
aaacaaaaacagtttagccgaagaaacaaatgttgataaaaatgaagctcaacagtcaaaagtggacttagagaccactaatgatgaaggtaccagcaaa |
39863963 |
T |
|
| Q |
101 |
gccaacaattcaaaattcgtcggcatagactttgaaaaaattaatgatatgatacttgaggagttgagaatatcattgctgcaacaaaccaatgttgaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39863962 |
gccaacaattcaaaattcgtcggcatagactttgaaaaaattaatgatatgatacttgaggagttgagaatatcattgctgcaacaaaccaatgttgaca |
39863863 |
T |
|
| Q |
201 |
aaagcgctaaaggtcaaccggaaaaagtggacatagagaccactcacaatgaaggttccagcaaagccagctcttcacaaaaaatcagcctagacttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39863862 |
aaagcgctaaaggtcaaccggaaaaagtggacatagagaccactcacaatgaaggttccagcaaagccagctcttcacaaaaaatcagcctagacttgaa |
39863763 |
T |
|
| Q |
301 |
agatattgatgctatgatagatgaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcaacattctgttcaa |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39863762 |
agatattgatgctatgataggtgaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcagcattctgttcaa |
39863663 |
T |
|
| Q |
401 |
ggacaagaagaggtcgcaaa |
420 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39863662 |
ggacaagaagaggtcgcaaa |
39863643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 410
Target Start/End: Complemental strand, 39856638 - 39856451
Alignment:
| Q |
223 |
aaaagtggacatagagaccactcacaatgaaggttccagcaaagccagctcttcacaaaaaatcagcctagacttgaaagatattgatgctatgatagat |
322 |
Q |
| |
|
||||||||| |||||||||||| | |||||||| ||| |||||||| | ||| | || ||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
39856638 |
aaaagtggatatagagaccacttatgatgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaattgatgctatgatagat |
39856539 |
T |
|
| Q |
323 |
gaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcaacattctgttcaaggacaagaag |
410 |
Q |
| |
|
|||||||| |||| ||| ||||||| ||| ||||| ||||||| ||| |||| ||| ||| ||| |||||||||||| |||||||| |
|
|
| T |
39856538 |
gaggatgtcattggtgcgatcgacagagtgttatcagaagggattactctttccttaaaatctcaccattctgttcaaaaacaagaag |
39856451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 39897150 - 39897070
Alignment:
| Q |
285 |
tcagcctagacttgaaagatattgatgctatgatagatgaggatgttattgctgcaatcgacaaagttttatccgaaggga |
365 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
39897150 |
tcagcatagacttggaagaaattgatgctatgatagatgaggatgtcattgctgcaatcgacagagttttatcagaaggga |
39897070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 39856653 - 39856542
Alignment:
| Q |
43 |
tgaagctcaacagtcaaaagtggacgtagagaccactaatgatgaaggtaccagcaaagccaacaattcaaaattcgtcggcatagactttgaaaaaatt |
142 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| || |||||| ||| ||| |||||| || ||||| |
|
|
| T |
39856653 |
tgaagctcaacagtcaaaagtggatatagagaccacttatgatgaaggtaccaacaaagccaacactttaaaatttgtcagcaaagacttgaaagaaatt |
39856554 |
T |
|
| Q |
143 |
aatgatatgata |
154 |
Q |
| |
|
||| ||||||| |
|
|
| T |
39856553 |
gatgctatgata |
39856542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 410
Target Start/End: Original strand, 38980373 - 38980491
Alignment:
| Q |
292 |
agacttgaaagatattgatgctatgatagatgaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcaacat |
391 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||| | ||| ||| ||||||||| ||||||| ||||||||| || ||| ||| ||| |
|
|
| T |
38980373 |
agacttgaaagaagttgatgctatgatagatgaggatgtcattgcttctatcaacagagttttatcagaagggattaccatttccgtaaaatctcagcat |
38980472 |
T |
|
| Q |
392 |
tctgttcaaggacaagaag |
410 |
Q |
| |
|
||||| |||| |||||||| |
|
|
| T |
38980473 |
tctgtccaagaacaagaag |
38980491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 409
Target Start/End: Original strand, 39737483 - 39737644
Alignment:
| Q |
248 |
aatgaaggttccagcaaagccagctcttcacaaaaaatcagcctagacttgaaagatattgatgctatgatagatgaggatgttattgctgcaatcgaca |
347 |
Q |
| |
|
||||||||| |||||||| ||| | ||||| || | ||||| |||||| |||| ||||||||||| ||||||||||||| ||||| ||||| |||| |
|
|
| T |
39737483 |
aatgaaggtaccagcaaatccaacacttcaaaattagtcagcatagactctgaagaatttgatgctatggtagatgaggatgtcattgcggcaattgaca |
39737582 |
T |
|
| Q |
348 |
aagttttatccgaagggaataccatttcattacaatttcaacattctgttcaaggacaagaa |
409 |
Q |
| |
|
||||||||| ||||||| ||| |||| ||| ||| || |||||||| ||||||| |||| |
|
|
| T |
39737583 |
gagttttatcggaagggattactctttccttaaaatcccagcattctgtccaaggacgagaa |
39737644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 39846812 - 39846749
Alignment:
| Q |
301 |
agatattgatgctatgatagatgaggatgttattgctgcaatcgacaaagttttatccgaaggg |
364 |
Q |
| |
|
|||| |||||| |||| |||||| ||||||||||| |||||||||||||||| |||| |||||| |
|
|
| T |
39846812 |
agatcttgatgatatggtagatgtggatgttattggtgcaatcgacaaagttatatcagaaggg |
39846749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 39737484 - 39737536
Alignment:
| Q |
84 |
atgaaggtaccagcaaagccaacaattcaaaattcgtcggcatagactttgaa |
136 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| ||| ||||||||| |||| |
|
|
| T |
39737484 |
atgaaggtaccagcaaatccaacacttcaaaattagtcagcatagactctgaa |
39737536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 39737430 - 39737477
Alignment:
| Q |
18 |
ccgaagaaacaaatgttgataaaaa---tgaagctcaacagtcaaaag |
62 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
39737430 |
ccgaagaaacaaatgttgacaaaaacattgaagctcaacagtcaaaag |
39737477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 39862049 - 39862082
Alignment:
| Q |
301 |
agatattgatgctatgatagatgaggatgttatt |
334 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
39862049 |
agatattgatactatgatagatgaggatgttatt |
39862082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 406
Target Start/End: Complemental strand, 32827043 - 32826937
Alignment:
| Q |
300 |
aagatattgatgctatgatagatgaggatgttattgctgcaatcgacaaagttttatccgaagggaataccatttcattacaatttcaacattctgttca |
399 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||||||||| |||| |||||||| ||||||| ||| || | ||| ||| || |||||||| || |
|
|
| T |
32827043 |
aagaaattgatgctatgatagatgaggacgttgttgctgcaattgacagagttttattagaagggattacttttcccttaaaatctcggcattctgtaca |
32826944 |
T |
|
| Q |
400 |
aggacaa |
406 |
Q |
| |
|
||||||| |
|
|
| T |
32826943 |
aggacaa |
32826937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 32827097 - 32827024
Alignment:
| Q |
81 |
atgatgaaggtaccagcaaagccaacaattcaaaattcgtcggcatagactttgaaaaaattaatgatatgata |
154 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||| || ||| ||| |||||||||| ||||| ||| ||||||| |
|
|
| T |
32827097 |
atgattaaggtaccagcaaaggcaacacttcaaagtttgtcagcaaagactttgaagaaattgatgctatgata |
32827024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University