View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9879_low_29 (Length: 394)
Name: NF9879_low_29
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 377
Target Start/End: Original strand, 40958803 - 40959168
Alignment:
| Q |
12 |
acagacaaaagctacgacagttagcatttaatctcaaggttgggagttacctttttaatattgatcgttaaccttaaatgtttatgagcaatgtccttga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40958803 |
acagacaaaagctacgacagttagcatttaatctcaaggttgggagttacctttttaatatggatcgttaaccttaaatgtttatgagcaatgtccttga |
40958902 |
T |
|
| Q |
112 |
aactttagagataaaaaatcacttgccactgctacattttattttgtataaggtgggacagtgggacttcttttttcttgtagttgaatacattttgtat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40958903 |
aactttagagataaaaaatcacttgccactgctacattttattttgtataaggtgggacagtgggacttcttttttcttgtagttgaatacattttgtat |
40959002 |
T |
|
| Q |
212 |
tatattacttattatttttaacgaccatgatatcaaatgtctaataaaatgtgttggnnnnnnnagccatgacccacatcatctatggcgttatccaaag |
311 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40959003 |
tatattacttattatttttaacgaccaggatatcaaatgtctaataaaatatgttggtttttttagccatgacccacatcatctatggtgttatccaaag |
40959102 |
T |
|
| Q |
312 |
ttttcagatgaatactaggcagaattaaggttttaatggtgtggttcttgtggctttacagattgt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40959103 |
ttttcagatgaatactaggcagaattaaggttttaatggtgtggttcttgtggctttacagattgt |
40959168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 40945818 - 40946024
Alignment:
| Q |
17 |
caaaagctacgacagttagcatttaatctcaaggttgggagttacctttttaatattgatcgttaaccttaaatgtttatgagcaatgtccttgaaactt |
116 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||||||||| |||||| |||| ||||| ||| |||||||||||||||| | ||| ||| ||||||||| |
|
|
| T |
40945818 |
caaaagttacgacagctagtctttaatctcaaggttggaagttac-ttttcaatatggattattaaccttaaatgtttttcagc---gtctttgaaactt |
40945913 |
T |
|
| Q |
117 |
tagagataaaaaatcacttgccactgctacattttattttgtataaggtgggacagtgggacttcttttttcttgtagttgaata--cattttgtattat |
214 |
Q |
| |
|
|||||| || ||||||||| ||| | |||| | |||||| ||||||||||||||||||||| |||||| ||||||||||||| |||| |||||| |
|
|
| T |
40945914 |
aagagatgaataatcacttgtcaccacgacatatgattttggataaggtgggacagtgggact--ttttttgttgtagttgaataggttttttttattat |
40946011 |
T |
|
| Q |
215 |
attacttattatt |
227 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40946012 |
attacttattatt |
40946024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 22507713 - 22507655
Alignment:
| Q |
35 |
gcatttaatctcaaggttgggagttacctttttaatattgatcgttaaccttaaatgtt |
93 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||||| || ||||||||||||||| |
|
|
| T |
22507713 |
gcatttaatcttaaggttgtgagttacttttttaatatgaattattaaccttaaatgtt |
22507655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University