View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_3 (Length: 779)
Name: NF9879_low_3
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 18 - 705
Target Start/End: Complemental strand, 11174001 - 11173314
Alignment:
| Q |
18 |
gtattggtatcagataccaaacacgtcttcaatttgaagtgtcggtgctacgtaggtttagtttacgtctcataatttagttgtaacaatacttattgct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11174001 |
gtattggtatcagataccaaacacgtcttcaatttgaagtgtcagtgctacgtaggtttagtttacgtctcataatttagttgtaacaatacttattgct |
11173902 |
T |
|
| Q |
118 |
taatatttaaatgtgaagtcgagaaatctttgataagtggcaagctagagtctggtggggtgagaattttgacagactcagggagctttataatgtccgg |
217 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173901 |
taacatttaaatgtgaagtcgcgaaatctttgataagtggcaagctagagtatggtggggtgagaattttgacagactcagggagctttataatgtccgg |
11173802 |
T |
|
| Q |
218 |
agtttcaatagccaagctcttagcactgctctaccatctgaggatgaggtaaactttaatttataacattcatatatgatttcaagactcttaatatcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11173801 |
agtttcaatagccaagctcttagcactgctctaccatctgaggatgaggtaaactttaatttttaacattcatatatgatttcaagactcttaatatcta |
11173702 |
T |
|
| Q |
318 |
attattagattgtttcctttgaacagcaaagagaagcttcttactcaatgcatgaaactggaagtggaagcaatgtggctgcttgggaaaacaatgatcc |
417 |
Q |
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| T |
11173701 |
attattacattgtttcctttgaaaagcaaagagaagcttcttactcaatgcatgaaactggaagtggaagcaatgtggctgcttgggaaaacaatgatcc |
11173602 |
T |
|
| Q |
418 |
aatggtggggaatcagtactttaatccttcaggattcactatgggtgagggaagcagtagcaaccaaaacatgcatgcagcattaaggtcttcttcaatg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11173601 |
aatggtggggaatcagtactttaatccttcaggattcactatgggtgagggaagcagtagcaaccaaaacatgcatgcagcattaaggtcttcttctatg |
11173502 |
T |
|
| Q |
518 |
aatgaaatttccttcagcaactctagtgaccctgactcagaatggattgagcaagttgagcctggaatatttgtcacagtcaggcagtatcctgatggga |
617 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173501 |
aatgaaatttccttcagcaattctagtgaccctgactcagaatggattgagcaagttgagcctggaatatttgtcacagtcaggcagtatcctgatggga |
11173402 |
T |
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| Q |
618 |
acaacgagcttagacgtatcaaattcaggtaacatgcttatgtttaagctatttctatttaataaaagatagtatacgaaaatttcta |
705 |
Q |
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| T |
11173401 |
acaacgagcttagacgtatcaaattcaggtaacatgcttatgtttaagctatttctatataataaaagatagtatacgaaaatttcta |
11173314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 4628324 - 4628293
Alignment:
| Q |
37 |
aacacgtcttcaatttgaagtgtcggtgctac |
68 |
Q |
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| T |
4628324 |
aacacgtcttcaatttgaagtgtcggtgctac |
4628293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 10794610 - 10794645
Alignment:
| Q |
37 |
aacacgtcttcaatttgaagtgtcggtgctacgtag |
72 |
Q |
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| T |
10794610 |
aacacgtcttcaatatgaagtgtcggtgctacgtag |
10794645 |
T |
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