View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_30 (Length: 393)

Name: NF9879_low_30
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_30
NF9879_low_30
[»] chr4 (3 HSPs)
chr4 (130-379)||(42308442-42308691)
chr4 (1-67)||(42308754-42308820)
chr4 (135-187)||(56051244-56051296)
[»] chr8 (4 HSPs)
chr8 (134-188)||(43638410-43638464)
chr8 (134-187)||(34649611-34649664)
chr8 (134-194)||(29012555-29012615)
chr8 (134-194)||(31666245-31666305)
[»] chr1 (6 HSPs)
chr1 (140-187)||(4795949-4795996)
chr1 (134-187)||(26940338-26940391)
chr1 (134-194)||(19067315-19067375)
chr1 (134-194)||(19115205-19115265)
chr1 (134-194)||(23201906-23201966)
chr1 (134-194)||(43360355-43360415)
[»] chr3 (3 HSPs)
chr3 (134-191)||(36040409-36040466)
chr3 (134-187)||(50001864-50001917)
chr3 (130-194)||(48519351-48519415)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 130 - 379
Target Start/End: Complemental strand, 42308691 - 42308442
Alignment:
Q  130 atacagtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagagaaaagtatcttcactgcttggttagatcgaaagtgataccc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42308691 atacagtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagagaaaagtatcttcactgcttggttagatcgaaagtgataccc 42308592  T
Q  230 tcgcaaaacaccatcgacaccatcagaacaacctagtctctcaaacttccaccgagaactaaaccaaggccatcaagtgtttcaaatttcacattaaaaa 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42308591 tcgcaaaacaccatcgacaccatcagaacaacctagtctctcaaacttccaccgagaactaaaccaaggccatcaagtgtttcaaatttcacattaaaaa 42308492  T
Q  330 gaagtaggtatgtattaaatgtgtcaaatttttgtatgaaagttcctatg 379  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42308491 gaagtaggtatgtattcaatgtgtcaaatttttgtatgaaagttcctatg 42308442  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42308820 - 42308754
Alignment:
Q  1 tagtttttaaatgacaaaaataccctttaattaaaaaaccaatataagcttttctcaatcaaattgt 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42308820 tagtttttaaatgacaaaaataccctttaattaaaaaaccaatataagcttttctccatcaaattgt 42308754  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 56051244 - 56051296
Alignment:
Q  135 gtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagaga 187  Q
    |||| ||||||||||| ||||||| |||||||||| | | |||||||||||||    
T  56051244 gtagatttgatgtattgtttggtagaagagaaagataagagaaatagaagaga 56051296  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 43638464 - 43638410
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagag 188  Q
    ||||| ||||||||||| |||||||||||||||||| | | ||||||||||||||    
T  43638464 agtagatttgatgtattgtttggtataagagaaagaaaagagaaatagaagagag 43638410  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 34649664 - 34649611
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagaga 187  Q
    ||||| ||||||||||| ||||||| |||||||||| | | |||||||||||||    
T  34649664 agtagatttgatgtattgtttggtagaagagaaagataagagaaatagaagaga 34649611  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 29012555 - 29012615
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagagaaaagt 194  Q
    ||||| ||||| || ||||||||| ||||||| ||||| | ||||||||||||||| ||||    
T  29012555 agtagatttgaggtgttatttggtttaagagagagagaagagaaatagaagagagagaagt 29012615  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 31666245 - 31666305
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagagaaaagt 194  Q
    ||||| ||||||||||| |||||||||| |||||||   | ||||||||||||||| ||||    
T  31666245 agtagatttgatgtattgtttggtataaaagaaagatgagagaaatagaagagagagaagt 31666305  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 4795949 - 4795996
Alignment:
Q  140 tttgatgtattatttggtataagagaaagagatgtgaaatagaagaga 187  Q
    ||||||||||||||||||||||||||||||   | |||||||||||||    
T  4795949 tttgatgtattatttggtataagagaaagaagagagaaatagaagaga 4795996  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 26940391 - 26940338
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagaga 187  Q
    ||||| ||||||||||| ||||||| |||||||||| | | |||||||||||||    
T  26940391 agtagatttgatgtattgtttggtagaagagaaagataagagaaatagaagaga 26940338  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 19067315 - 19067375
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagagaaaagt 194  Q
    ||||| |||||||| || |||||| |||||||| |||| | ||||||||||||||| ||||    
T  19067315 agtagatttgatgtgttgtttggtgtaagagaatgagaagagaaatagaagagagagaagt 19067375  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 19115205 - 19115265
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagagaaaagt 194  Q
    ||||| |||||||| || |||||| |||||||| |||| | ||||||||||||||| ||||    
T  19115205 agtagatttgatgtgttgtttggtgtaagagaatgagaagagaaatagaagagagagaagt 19115265  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 23201966 - 23201906
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagagaaaagt 194  Q
    ||||| ||||||||||| |||||| ||||||||||| | | |||| |||||||||| ||||    
T  23201966 agtagatttgatgtattctttggtttaagagaaagataagagaaaaagaagagagagaagt 23201906  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 43360355 - 43360415
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagagaaaagt 194  Q
    ||||| ||||||||||| |||||| ||||||||||| | | |||| |||||||||| ||||    
T  43360355 agtagatttgatgtattgtttggtttaagagaaagataagagaaaaagaagagagagaagt 43360415  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 36040409 - 36040466
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagagaaa 191  Q
    ||||| ||||||||||| ||||| | ||||||||||  || |||||||||||||||||    
T  36040409 agtagatttgatgtattgtttggaagaagagaaagatttgagaaatagaagagagaaa 36040466  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 50001917 - 50001864
Alignment:
Q  134 agtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagaga 187  Q
    ||||| ||||||||||| ||||||| |||||||||| | | |||||||||||||    
T  50001917 agtagatttgatgtattgtttggtagaagagaaagataagagaaatagaagaga 50001864  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 48519415 - 48519351
Alignment:
Q  130 atacagtagttttgatgtattatttggtataagagaaagagatgtgaaatagaagagagaaaagt 194  Q
    ||||||||| |||||||| || ||| || |||||||| |||| | ||||||||||||||| ||||    
T  48519415 atacagtagatttgatgtgttgtttagtgtaagagaatgagaagagaaatagaagagagagaagt 48519351  T

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