View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_31 (Length: 391)
Name: NF9879_low_31
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 47990730 - 47991107
Alignment:
| Q |
1 |
tgttaggtttaccttcaatttgtgannnnnnnnccagttgataacgcccctccttgttcagtctactcattgagctgggttttcgcaaaatttcttaatt |
100 |
Q |
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| T |
47990730 |
tgttaggtttaccttcaatttgtgattttttt--cagttgataacgcccctccctgttcagtctactcattgagctgggttttcgcaaaatttcttaatt |
47990827 |
T |
|
| Q |
101 |
ttaagggtttactaataattcatttaactttttcaaaaaactcttcattcagggtaatgttattcgtgttaaaggcgatgaattctggcacatgactaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47990828 |
ttaagggtttactaataattcatttaactttttcaaaaaactcttcattcagggtaatgttattcgtgttaaaggcgatgaattctggcacatgactaaa |
47990927 |
T |
|
| Q |
201 |
gtattgaggctctccaccaatgctaggtaatttgtttgttttttcacaattaattttatccttcaaa---nnnnnnnnnnnaatgactataaatgcattc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
47990928 |
gtattgaggctctccaccaatgctaggtaatttgtttgttttttcacaattaattttatccttcaaattgtttttttttttaatgactataaatgcactc |
47991027 |
T |
|
| Q |
298 |
tggaaaccacagtagattgaatgttgaacatttcatgcctgcaaatcttgtgtgtatgttattaagtgctaattcttttt |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47991028 |
tggaaaccacagtagattgaatgttgaacattgcatgcctgcaaatcttgtgtgtatgttattaagtgctaattcttttt |
47991107 |
T |
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