View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_32 (Length: 391)
Name: NF9879_low_32
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 4 - 377
Target Start/End: Original strand, 27331760 - 27332133
Alignment:
| Q |
4 |
ggagtagcataggtgagaaggaaagaaagaaaaaatggcaatcacactgaatagcggattcaagatgccaatcattgggcttggagtttggcgcatggaa |
103 |
Q |
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| T |
27331760 |
ggagttgcagaggtgagaaggaaagaaagaaaaaatggcaatcacactgaacagcggattcaagatgccaatcattggacttggagtttggcgcatggaa |
27331859 |
T |
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| Q |
104 |
ggacaagcaatcaaagacttaattatcaattccatcaaaatcggttatcgtcattttgattgtgctggtattttcnnnnnnnactccttcaaatttagat |
203 |
Q |
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| T |
27331860 |
ggacaagcaatcaaagacttaattatcaattccataaaaatcggttatcgtcattttgattgtgctggtattttctttttttactccttcaaatttagat |
27331959 |
T |
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| Q |
204 |
ttcaatctagttttttagctcgttgttttgaattttgattgtgttgtagctgactacaagaacgaagcagaagttggagaagcacttaaagaagcttttg |
303 |
Q |
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| T |
27331960 |
ttcaatctagttttttagctcgttgttttgaattttgattgtgttgtagctgactacaagaacgaagcagaagttggagaagcacttaaagaagcttttg |
27332059 |
T |
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| Q |
304 |
acactggacttgtgaagagggaggatcttttcattaccaccaaggtacaatttgattagatacatgtgtggaat |
377 |
Q |
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| T |
27332060 |
acactggacttgtgaagagggaggatcttttcattaccaccaaggtacaatttgattagatacatgtgtggaat |
27332133 |
T |
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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 32566779 - 32566723
Alignment:
| Q |
290 |
taaagaagcttttgacactggacttgtgaagagggaggatcttttcattaccaccaa |
346 |
Q |
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| T |
32566779 |
taaagaagcttttgacactggacttgtgaagaaggaggatcttttcattacaaccaa |
32566723 |
T |
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